Strain Fitness in Pseudomonas simiae WCS417 around PS417_06150

Experiment: Carbon source L-Ornithine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06135 and PS417_06140 are separated by 182 nucleotidesPS417_06140 and PS417_06145 are separated by 139 nucleotidesPS417_06145 and PS417_06150 are separated by 54 nucleotidesPS417_06150 and PS417_06155 overlap by 1 nucleotides PS417_06135: PS417_06135 - glycerol-3-phosphate acyltransferase, at 1,359,056 to 1,361,575 _06135 PS417_06140: PS417_06140 - cold-shock protein, at 1,361,758 to 1,361,967 _06140 PS417_06145: PS417_06145 - hypothetical protein, at 1,362,107 to 1,362,484 _06145 PS417_06150: PS417_06150 - SAM-dependent methlyltransferase, at 1,362,539 to 1,363,348 _06150 PS417_06155: PS417_06155 - succinyl-diaminopimelate desuccinylase, at 1,363,348 to 1,364,499 _06155 Position (kb) 1362 1363 1364Strain fitness (log2 ratio) -1 0 1 2at 1361.550 kb on - strandat 1361.575 kb on + strandat 1361.750 kb on + strandat 1361.810 kb on - strand, within PS417_06140at 1361.836 kb on - strand, within PS417_06140at 1361.854 kb on + strand, within PS417_06140at 1361.911 kb on + strand, within PS417_06140at 1361.912 kb on - strand, within PS417_06140at 1362.295 kb on - strand, within PS417_06145at 1362.536 kb on + strandat 1362.541 kb on - strandat 1362.768 kb on + strand, within PS417_06150at 1362.769 kb on - strand, within PS417_06150at 1363.012 kb on + strand, within PS417_06150at 1363.069 kb on - strand, within PS417_06150at 1363.251 kb on + strand, within PS417_06150

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM
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1,361,550 - -1.1
1,361,575 + -0.1
1,361,750 + +0.3
1,361,810 - PS417_06140 0.25 -0.4
1,361,836 - PS417_06140 0.37 -0.1
1,361,854 + PS417_06140 0.46 -0.1
1,361,911 + PS417_06140 0.73 -0.2
1,361,912 - PS417_06140 0.73 -0.6
1,362,295 - PS417_06145 0.50 -0.1
1,362,536 + +0.5
1,362,541 - +0.2
1,362,768 + PS417_06150 0.28 -0.5
1,362,769 - PS417_06150 0.28 +0.7
1,363,012 + PS417_06150 0.58 +2.7
1,363,069 - PS417_06150 0.65 +0.5
1,363,251 + PS417_06150 0.88 +0.6

Or see this region's nucleotide sequence