Experiment: Carbon source D-Mannitol 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26235 and PS417_26240 are separated by 183 nucleotides PS417_26240 and PS417_26245 are separated by 15 nucleotides PS417_26245 and PS417_26250 are separated by 78 nucleotides
PS417_26235: PS417_26235 - (Fe-S)-binding protein, at 5,670,045 to 5,671,985
_26235
PS417_26240: PS417_26240 - N-methylproline demethylase, at 5,672,169 to 5,674,229
_26240
PS417_26245: PS417_26245 - hypothetical protein, at 5,674,245 to 5,674,775
_26245
PS417_26250: PS417_26250 - peptidase M19, at 5,674,854 to 5,675,831
_26250
Position (kb) 5672
5673
5674
5675 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5671.802 kb on - strand at 5672.149 kb on - strand at 5672.200 kb on + strand at 5672.200 kb on + strand at 5672.258 kb on - strand at 5672.258 kb on - strand at 5672.356 kb on + strand at 5673.173 kb on - strand, within PS417_26240 at 5673.280 kb on + strand, within PS417_26240 at 5673.601 kb on - strand, within PS417_26240 at 5673.776 kb on - strand, within PS417_26240 at 5674.096 kb on + strand at 5674.096 kb on + strand at 5674.096 kb on + strand at 5674.099 kb on + strand at 5674.109 kb on - strand at 5674.142 kb on - strand at 5674.247 kb on - strand at 5674.301 kb on - strand, within PS417_26245 at 5674.301 kb on - strand, within PS417_26245 at 5674.387 kb on + strand, within PS417_26245 at 5674.388 kb on - strand, within PS417_26245 at 5674.388 kb on - strand, within PS417_26245 at 5674.612 kb on + strand, within PS417_26245 at 5674.612 kb on + strand, within PS417_26245 at 5674.612 kb on + strand, within PS417_26245 at 5674.613 kb on - strand, within PS417_26245 at 5674.613 kb on - strand, within PS417_26245 at 5674.613 kb on - strand, within PS417_26245 at 5674.628 kb on - strand, within PS417_26245 at 5674.668 kb on - strand, within PS417_26245 at 5674.783 kb on + strand at 5674.784 kb on - strand at 5674.856 kb on - strand at 5675.131 kb on + strand, within PS417_26250 at 5675.131 kb on + strand, within PS417_26250 at 5675.132 kb on - strand, within PS417_26250
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 2.5 mM remove 5,671,802 - +0.0 5,672,149 - +0.6 5,672,200 + +0.8 5,672,200 + +0.3 5,672,258 - +0.8 5,672,258 - -0.1 5,672,356 + +0.6 5,673,173 - PS417_26240 0.49 -0.3 5,673,280 + PS417_26240 0.54 -0.3 5,673,601 - PS417_26240 0.69 -3.5 5,673,776 - PS417_26240 0.78 -1.0 5,674,096 + -1.3 5,674,096 + +1.3 5,674,096 + +0.0 5,674,099 + -0.0 5,674,109 - +1.2 5,674,142 - +0.1 5,674,247 - -1.4 5,674,301 - PS417_26245 0.11 +0.6 5,674,301 - PS417_26245 0.11 +0.3 5,674,387 + PS417_26245 0.27 +0.5 5,674,388 - PS417_26245 0.27 +0.7 5,674,388 - PS417_26245 0.27 +0.6 5,674,612 + PS417_26245 0.69 -0.2 5,674,612 + PS417_26245 0.69 -0.1 5,674,612 + PS417_26245 0.69 -1.2 5,674,613 - PS417_26245 0.69 +0.3 5,674,613 - PS417_26245 0.69 +1.6 5,674,613 - PS417_26245 0.69 -0.1 5,674,628 - PS417_26245 0.72 +0.5 5,674,668 - PS417_26245 0.80 -0.2 5,674,783 + -0.2 5,674,784 - -2.6 5,674,856 - -0.4 5,675,131 + PS417_26250 0.28 -0.8 5,675,131 + PS417_26250 0.28 -1.4 5,675,132 - PS417_26250 0.28 +2.8
Or see this region's nucleotide sequence