Strain Fitness in Pseudomonas simiae WCS417 around PS417_18325

Experiment: Carbon source D-Mannitol 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_18320 and PS417_18325 are separated by 26 nucleotidesPS417_18325 and PS417_18330 are separated by 108 nucleotidesPS417_18330 and PS417_18335 are separated by 30 nucleotidesPS417_18335 and PS417_18340 are separated by 60 nucleotides PS417_18320: PS417_18320 - phenylalanyl-tRNA synthetase, at 3,991,627 to 3,994,005 _18320 PS417_18325: PS417_18325 - phenylalanyl-tRNA synthetase, at 3,994,032 to 3,995,048 _18325 PS417_18330: PS417_18330 - 50S ribosomal protein L20, at 3,995,157 to 3,995,513 _18330 PS417_18335: PS417_18335 - 50S ribosomal protein L35, at 3,995,544 to 3,995,738 _18335 PS417_18340: PS417_18340 - translation initiation factor IF-3, at 3,995,799 to 3,996,332 _18340 Position (kb) 3994 3995 3996Strain fitness (log2 ratio) -1 0 1at 3995.064 kb on - strandat 3995.103 kb on - strandat 3995.103 kb on - strandat 3995.103 kb on - strandat 3995.103 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 2.5 mM
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3,995,064 - -0.5
3,995,103 - -0.5
3,995,103 - +0.2
3,995,103 - -0.4
3,995,103 - -0.0

Or see this region's nucleotide sequence