Strain Fitness in Pseudomonas simiae WCS417 around PS417_01470

Experiment: Carbon source D-Mannitol 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01460 and PS417_01465 are separated by 123 nucleotidesPS417_01465 and PS417_01470 are separated by 348 nucleotidesPS417_01470 and PS417_01475 are separated by 207 nucleotides PS417_01460: PS417_01460 - tRNA-Thr, at 325,847 to 325,922 _01460 PS417_01465: PS417_01465 - hypothetical protein, at 326,046 to 326,279 _01465 PS417_01470: PS417_01470 - cell division protein FtsQ, at 326,628 to 327,578 _01470 PS417_01475: PS417_01475 - cell division protein FtsQ, at 327,786 to 328,706 _01475 Position (kb) 326 327 328Strain fitness (log2 ratio) -2 -1 0 1 2at 325.671 kb on + strandat 325.726 kb on + strandat 325.727 kb on - strandat 325.727 kb on - strandat 326.092 kb on - strand, within PS417_01465at 326.119 kb on + strand, within PS417_01465at 326.119 kb on + strand, within PS417_01465at 326.119 kb on + strand, within PS417_01465at 326.120 kb on - strand, within PS417_01465at 326.120 kb on - strand, within PS417_01465at 326.304 kb on + strandat 326.320 kb on + strandat 326.321 kb on - strandat 326.338 kb on + strandat 326.338 kb on + strandat 326.338 kb on + strandat 326.338 kb on + strandat 326.338 kb on + strandat 326.339 kb on - strandat 326.339 kb on - strandat 326.400 kb on - strandat 326.400 kb on - strandat 326.596 kb on + strandat 326.608 kb on + strandat 326.656 kb on + strandat 326.656 kb on + strandat 326.657 kb on - strandat 326.658 kb on + strandat 326.659 kb on - strandat 326.812 kb on - strand, within PS417_01470at 326.988 kb on - strandat 326.988 kb on - strand, within PS417_01470at 327.217 kb on + strand, within PS417_01470at 327.218 kb on - strand, within PS417_01470at 327.218 kb on - strand, within PS417_01470at 327.218 kb on - strand, within PS417_01470at 327.220 kb on - strand, within PS417_01470at 327.220 kb on - strand, within PS417_01470at 327.233 kb on + strand, within PS417_01470at 327.234 kb on - strand, within PS417_01470at 327.234 kb on - strand, within PS417_01470at 327.234 kb on - strand, within PS417_01470at 327.324 kb on + strand, within PS417_01470at 327.358 kb on - strand, within PS417_01470at 327.358 kb on - strand, within PS417_01470at 327.358 kb on - strand, within PS417_01470at 327.412 kb on + strand, within PS417_01470at 327.413 kb on - strand, within PS417_01470at 327.413 kb on - strand, within PS417_01470at 327.413 kb on - strand, within PS417_01470at 327.413 kb on - strand, within PS417_01470at 327.413 kb on - strand, within PS417_01470at 327.470 kb on + strand, within PS417_01470at 327.542 kb on + strandat 327.543 kb on - strandat 327.547 kb on + strandat 327.547 kb on + strandat 327.547 kb on + strandat 327.547 kb on + strandat 327.548 kb on - strandat 327.577 kb on - strandat 327.577 kb on - strandat 327.577 kb on - strandat 327.715 kb on + strandat 327.715 kb on + strandat 327.715 kb on + strandat 327.716 kb on - strandat 327.716 kb on - strandat 327.736 kb on + strandat 327.736 kb on + strandat 327.737 kb on - strandat 327.737 kb on - strandat 327.737 kb on - strandat 327.760 kb on - strandat 328.307 kb on + strand, within PS417_01475at 328.375 kb on + strand, within PS417_01475at 328.375 kb on + strand, within PS417_01475at 328.566 kb on + strand, within PS417_01475at 328.567 kb on - strand, within PS417_01475at 328.567 kb on - strand, within PS417_01475

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 5 mM
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325,671 + +0.6
325,726 + -1.9
325,727 - -0.7
325,727 - +0.2
326,092 - PS417_01465 0.20 +0.0
326,119 + PS417_01465 0.31 +0.1
326,119 + PS417_01465 0.31 +0.3
326,119 + PS417_01465 0.31 +0.3
326,120 - PS417_01465 0.32 -1.4
326,120 - PS417_01465 0.32 -0.2
326,304 + +0.1
326,320 + -1.0
326,321 - -1.1
326,338 + +1.8
326,338 + -0.1
326,338 + -1.0
326,338 + +0.2
326,338 + -0.9
326,339 - +0.1
326,339 - -0.2
326,400 - -0.3
326,400 - -0.7
326,596 + +1.2
326,608 + +0.3
326,656 + -1.7
326,656 + +0.4
326,657 - -0.7
326,658 + -0.4
326,659 - -1.2
326,812 - PS417_01470 0.19 +2.4
326,988 - +1.3
326,988 - PS417_01470 0.38 +0.4
327,217 + PS417_01470 0.62 +0.5
327,218 - PS417_01470 0.62 +0.8
327,218 - PS417_01470 0.62 +0.5
327,218 - PS417_01470 0.62 -1.0
327,220 - PS417_01470 0.62 +0.3
327,220 - PS417_01470 0.62 +0.2
327,233 + PS417_01470 0.64 -2.1
327,234 - PS417_01470 0.64 +0.0
327,234 - PS417_01470 0.64 +0.2
327,234 - PS417_01470 0.64 +0.3
327,324 + PS417_01470 0.73 +0.8
327,358 - PS417_01470 0.77 +0.1
327,358 - PS417_01470 0.77 +0.4
327,358 - PS417_01470 0.77 -0.3
327,412 + PS417_01470 0.82 +0.1
327,413 - PS417_01470 0.83 +0.6
327,413 - PS417_01470 0.83 +1.1
327,413 - PS417_01470 0.83 +0.2
327,413 - PS417_01470 0.83 -0.1
327,413 - PS417_01470 0.83 +0.1
327,470 + PS417_01470 0.89 +0.3
327,542 + +1.3
327,543 - +0.2
327,547 + +0.2
327,547 + +0.4
327,547 + +0.6
327,547 + -0.1
327,548 - +0.8
327,577 - +0.5
327,577 - -0.2
327,577 - +0.0
327,715 + +0.0
327,715 + -0.3
327,715 + +1.1
327,716 - +0.3
327,716 - +0.2
327,736 + +1.1
327,736 + -1.1
327,737 - -0.0
327,737 - +0.2
327,737 - -1.1
327,760 - -0.2
328,307 + PS417_01475 0.57 -0.5
328,375 + PS417_01475 0.64 -0.2
328,375 + PS417_01475 0.64 -0.3
328,566 + PS417_01475 0.85 +0.2
328,567 - PS417_01475 0.85 -0.2
328,567 - PS417_01475 0.85 +0.4

Or see this region's nucleotide sequence