Strain Fitness in Pseudomonas simiae WCS417 around PS417_13075
Experiment: Carbon source D-Mannitol 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source D-Mannitol 5 mM |
---|---|---|---|---|---|
remove | |||||
2,856,284 | - | PS417_13065 | 0.73 | +1.5 | |
2,856,415 | + | PS417_13065 | 0.88 | -0.4 | |
2,856,416 | - | PS417_13065 | 0.89 | +0.2 | |
2,856,416 | - | -0.2 | |||
2,856,452 | + | -1.8 | |||
2,857,057 | - | +1.2 | |||
2,857,057 | - | -0.1 | |||
2,857,060 | + | +0.3 | |||
2,857,082 | + | +0.3 | |||
2,857,086 | + | +0.2 | |||
2,857,087 | - | -1.2 | |||
2,857,152 | + | +1.0 | |||
2,857,152 | + | +0.9 | |||
2,857,153 | - | +0.3 | |||
2,857,153 | - | +0.0 | |||
2,857,174 | - | +0.6 | |||
2,857,251 | + | +2.5 | |||
2,857,251 | + | +0.4 | |||
2,857,251 | + | +0.0 | |||
2,857,252 | - | +0.3 | |||
2,857,252 | - | +0.2 | |||
2,857,255 | + | -0.1 | |||
2,857,256 | - | +0.9 | |||
2,857,256 | - | +0.2 | |||
2,857,566 | + | PS417_13075 | 0.81 | -0.8 | |
2,857,567 | - | PS417_13075 | 0.82 | +0.8 | |
2,857,567 | - | PS417_13075 | 0.82 | -1.4 | |
2,857,804 | + | PS417_13080 | 0.19 | +0.7 | |
2,857,804 | + | PS417_13080 | 0.19 | +0.6 | |
2,858,512 | + | +1.0 | |||
2,858,513 | - | +0.3 | |||
2,858,513 | - | +0.5 | |||
2,858,515 | + | +1.2 | |||
2,858,516 | - | +0.1 | |||
2,858,571 | + | +1.2 |
Or see this region's nucleotide sequence