Strain Fitness in Pseudomonas simiae WCS417 around PS417_12690
Experiment: Carbon source D-Mannitol 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source D-Mannitol 5 mM |
---|---|---|---|---|---|
remove | |||||
2,760,164 | - | PS417_12685 | 0.68 | -0.8 | |
2,760,382 | + | -3.1 | |||
2,760,382 | + | -4.0 | |||
2,760,383 | - | -2.1 | |||
2,760,383 | - | -4.4 | |||
2,760,457 | + | -1.4 | |||
2,760,457 | + | -3.0 | |||
2,760,458 | - | -2.8 | |||
2,760,458 | - | -3.7 | |||
2,760,458 | - | -4.2 | |||
2,760,458 | - | -2.4 | |||
2,760,461 | + | -4.4 | |||
2,760,461 | + | -2.7 | |||
2,760,461 | + | -3.0 | |||
2,760,462 | - | -4.8 | |||
2,761,132 | + | PS417_12690 | 0.44 | -1.4 | |
2,761,133 | - | PS417_12690 | 0.44 | -3.6 | |
2,761,451 | - | PS417_12690 | 0.66 | -4.1 | |
2,761,460 | - | PS417_12690 | 0.67 | -3.0 | |
2,761,869 | + | -5.2 | |||
2,761,870 | - | -2.8 | |||
2,762,062 | - | -5.7 | |||
2,762,095 | - | -1.4 | |||
2,762,095 | - | -2.9 | |||
2,762,098 | + | -2.6 | |||
2,762,099 | - | -3.3 | |||
2,762,099 | - | -2.2 | |||
2,762,116 | - | -2.5 | |||
2,762,116 | - | -3.3 | |||
2,762,116 | - | -3.2 | |||
2,762,308 | + | -1.6 | |||
2,762,309 | - | -0.8 | |||
2,762,341 | + | PS417_12695 | 0.16 | -4.1 | |
2,762,578 | + | PS417_12695 | 0.32 | -3.3 | |
2,762,590 | + | PS417_12695 | 0.33 | -4.6 |
Or see this region's nucleotide sequence