Strain Fitness in Pseudomonas simiae WCS417 around PS417_02685

Experiment: Carbon source L-Citrulline 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02680 and PS417_02685 are separated by 179 nucleotidesPS417_02685 and PS417_02690 overlap by 29 nucleotides PS417_02680: PS417_02680 - hypothetical protein, at 613,838 to 614,605 _02680 PS417_02685: PS417_02685 - cation diffusion facilitator family transporter, at 614,785 to 615,690 _02685 PS417_02690: PS417_02690 - N-acylglucosamine 2-epimerase, at 615,662 to 616,780 _02690 Position (kb) 614 615 616Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 613.855 kb on + strandat 613.856 kb on - strandat 614.106 kb on + strand, within PS417_02680at 614.267 kb on + strand, within PS417_02680at 614.291 kb on + strand, within PS417_02680at 614.291 kb on + strand, within PS417_02680at 614.292 kb on - strand, within PS417_02680at 614.439 kb on - strand, within PS417_02680at 614.451 kb on - strand, within PS417_02680at 614.603 kb on + strandat 614.603 kb on + strandat 614.603 kb on + strandat 614.604 kb on - strandat 614.604 kb on - strandat 614.604 kb on - strandat 614.718 kb on + strandat 614.718 kb on + strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.719 kb on - strandat 614.723 kb on + strandat 614.738 kb on - strandat 615.061 kb on + strand, within PS417_02685at 615.061 kb on + strand, within PS417_02685at 615.061 kb on + strand, within PS417_02685at 615.062 kb on - strand, within PS417_02685at 615.062 kb on - strand, within PS417_02685at 615.134 kb on - strand, within PS417_02685at 615.166 kb on + strand, within PS417_02685at 615.166 kb on + strand, within PS417_02685at 615.167 kb on - strand, within PS417_02685at 615.175 kb on + strand, within PS417_02685at 615.176 kb on - strand, within PS417_02685at 615.328 kb on + strand, within PS417_02685at 615.328 kb on + strand, within PS417_02685at 615.329 kb on - strand, within PS417_02685at 615.413 kb on + strand, within PS417_02685at 615.413 kb on + strand, within PS417_02685at 615.496 kb on + strand, within PS417_02685at 615.496 kb on + strand, within PS417_02685at 615.496 kb on + strand, within PS417_02685at 615.496 kb on + strand, within PS417_02685at 615.497 kb on - strand, within PS417_02685at 615.497 kb on - strand, within PS417_02685at 615.497 kb on - strand, within PS417_02685at 615.497 kb on - strand, within PS417_02685at 615.497 kb on - strand, within PS417_02685at 615.506 kb on - strand, within PS417_02685at 615.542 kb on + strand, within PS417_02685at 615.542 kb on + strand, within PS417_02685at 615.542 kb on + strand, within PS417_02685at 615.543 kb on - strand, within PS417_02685at 615.543 kb on - strand, within PS417_02685at 615.543 kb on - strand, within PS417_02685at 615.543 kb on - strand, within PS417_02685at 615.543 kb on - strand, within PS417_02685at 615.663 kb on + strandat 615.699 kb on + strandat 615.892 kb on + strand, within PS417_02690at 615.893 kb on - strand, within PS417_02690at 616.087 kb on + strand, within PS417_02690at 616.088 kb on - strand, within PS417_02690at 616.303 kb on - strand, within PS417_02690at 616.480 kb on - strand, within PS417_02690at 616.596 kb on + strand, within PS417_02690at 616.597 kb on - strand, within PS417_02690at 616.597 kb on - strand, within PS417_02690at 616.671 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM
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613,855 + -0.3
613,856 - +0.3
614,106 + PS417_02680 0.35 +0.2
614,267 + PS417_02680 0.56 +0.5
614,291 + PS417_02680 0.59 +0.0
614,291 + PS417_02680 0.59 +0.1
614,292 - PS417_02680 0.59 -1.6
614,439 - PS417_02680 0.78 +0.2
614,451 - PS417_02680 0.80 +0.1
614,603 + -0.1
614,603 + +0.3
614,603 + +0.4
614,604 - +0.4
614,604 - -1.3
614,604 - +1.8
614,718 + +1.8
614,718 + +0.2
614,719 - +0.7
614,719 - -0.7
614,719 - -0.3
614,719 - -0.8
614,719 - +0.4
614,719 - +0.8
614,719 - +1.0
614,723 + +0.2
614,738 - -0.2
615,061 + PS417_02685 0.30 +1.3
615,061 + PS417_02685 0.30 +0.4
615,061 + PS417_02685 0.30 +0.4
615,062 - PS417_02685 0.31 -0.5
615,062 - PS417_02685 0.31 -0.4
615,134 - PS417_02685 0.39 -2.8
615,166 + PS417_02685 0.42 -0.2
615,166 + PS417_02685 0.42 -0.2
615,167 - PS417_02685 0.42 -0.6
615,175 + PS417_02685 0.43 +0.0
615,176 - PS417_02685 0.43 -0.3
615,328 + PS417_02685 0.60 +1.2
615,328 + PS417_02685 0.60 -0.4
615,329 - PS417_02685 0.60 +1.1
615,413 + PS417_02685 0.69 +0.7
615,413 + PS417_02685 0.69 +0.8
615,496 + PS417_02685 0.78 +0.6
615,496 + PS417_02685 0.78 +0.4
615,496 + PS417_02685 0.78 -0.2
615,496 + PS417_02685 0.78 -0.8
615,497 - PS417_02685 0.79 +0.6
615,497 - PS417_02685 0.79 +0.2
615,497 - PS417_02685 0.79 -1.7
615,497 - PS417_02685 0.79 -0.2
615,497 - PS417_02685 0.79 -0.2
615,506 - PS417_02685 0.80 -1.3
615,542 + PS417_02685 0.84 -0.3
615,542 + PS417_02685 0.84 -2.6
615,542 + PS417_02685 0.84 -0.1
615,543 - PS417_02685 0.84 +1.8
615,543 - PS417_02685 0.84 -0.3
615,543 - PS417_02685 0.84 +0.5
615,543 - PS417_02685 0.84 -0.0
615,543 - PS417_02685 0.84 +2.3
615,663 + -1.5
615,699 + -3.5
615,892 + PS417_02690 0.21 -1.0
615,893 - PS417_02690 0.21 -0.8
616,087 + PS417_02690 0.38 -1.4
616,088 - PS417_02690 0.38 -0.5
616,303 - PS417_02690 0.57 -1.3
616,480 - PS417_02690 0.73 -1.2
616,596 + PS417_02690 0.83 -1.2
616,597 - PS417_02690 0.84 -2.0
616,597 - PS417_02690 0.84 -3.6
616,671 + -0.4

Or see this region's nucleotide sequence