Strain Fitness in Pseudomonas simiae WCS417 around PS417_19210

Experiment: Carbon source L-Citrulline 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_19205 and PS417_19210 are separated by 130 nucleotidesPS417_19210 and PS417_19215 are separated by 91 nucleotides PS417_19205: PS417_19205 - membrane protein, at 4,161,566 to 4,162,522 _19205 PS417_19210: PS417_19210 - acetyl-CoA acetyltransferase, at 4,162,653 to 4,163,837 _19210 PS417_19215: PS417_19215 - polyphosphate kinase, at 4,163,929 to 4,165,455 _19215 Position (kb) 4162 4163 4164Strain fitness (log2 ratio) -2 -1 0 1at 4161.699 kb on + strand, within PS417_19205at 4161.700 kb on - strand, within PS417_19205at 4161.832 kb on + strand, within PS417_19205at 4161.933 kb on + strand, within PS417_19205at 4161.934 kb on - strand, within PS417_19205at 4161.934 kb on - strand, within PS417_19205at 4161.996 kb on + strand, within PS417_19205at 4161.997 kb on - strand, within PS417_19205at 4162.010 kb on - strand, within PS417_19205at 4162.047 kb on + strand, within PS417_19205at 4162.130 kb on + strand, within PS417_19205at 4162.130 kb on + strand, within PS417_19205at 4162.251 kb on + strand, within PS417_19205at 4162.251 kb on + strand, within PS417_19205at 4162.251 kb on + strand, within PS417_19205at 4162.252 kb on - strand, within PS417_19205at 4162.260 kb on + strand, within PS417_19205at 4162.260 kb on + strand, within PS417_19205at 4162.560 kb on + strandat 4162.601 kb on + strandat 4162.730 kb on + strandat 4162.730 kb on + strandat 4162.825 kb on + strand, within PS417_19210at 4163.248 kb on + strand, within PS417_19210at 4163.248 kb on + strand, within PS417_19210at 4163.248 kb on + strand, within PS417_19210at 4163.249 kb on - strand, within PS417_19210at 4163.332 kb on + strand, within PS417_19210at 4163.332 kb on + strand, within PS417_19210at 4163.332 kb on + strand, within PS417_19210at 4163.332 kb on + strand, within PS417_19210at 4163.333 kb on - strand, within PS417_19210at 4163.333 kb on - strand, within PS417_19210at 4163.333 kb on - strand, within PS417_19210at 4163.333 kb on - strand, within PS417_19210at 4163.333 kb on - strand, within PS417_19210at 4163.405 kb on - strand, within PS417_19210at 4163.644 kb on + strand, within PS417_19210at 4163.644 kb on + strand, within PS417_19210at 4163.826 kb on + strandat 4163.827 kb on - strandat 4163.827 kb on - strandat 4163.842 kb on + strandat 4163.881 kb on - strandat 4163.931 kb on - strandat 4164.117 kb on - strand, within PS417_19215at 4164.425 kb on + strand, within PS417_19215at 4164.477 kb on - strand, within PS417_19215at 4164.477 kb on - strand, within PS417_19215at 4164.622 kb on + strand, within PS417_19215at 4164.623 kb on - strand, within PS417_19215

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM
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4,161,699 + PS417_19205 0.14 -1.5
4,161,700 - PS417_19205 0.14 -2.2
4,161,832 + PS417_19205 0.28 -0.6
4,161,933 + PS417_19205 0.38 -0.1
4,161,934 - PS417_19205 0.38 -0.5
4,161,934 - PS417_19205 0.38 -0.2
4,161,996 + PS417_19205 0.45 -1.6
4,161,997 - PS417_19205 0.45 -0.9
4,162,010 - PS417_19205 0.46 -1.5
4,162,047 + PS417_19205 0.50 +0.0
4,162,130 + PS417_19205 0.59 +0.7
4,162,130 + PS417_19205 0.59 -1.3
4,162,251 + PS417_19205 0.72 -0.3
4,162,251 + PS417_19205 0.72 +0.0
4,162,251 + PS417_19205 0.72 -0.5
4,162,252 - PS417_19205 0.72 -1.1
4,162,260 + PS417_19205 0.73 -0.0
4,162,260 + PS417_19205 0.73 +0.2
4,162,560 + +0.2
4,162,601 + -0.1
4,162,730 + -0.6
4,162,730 + +0.2
4,162,825 + PS417_19210 0.15 -0.8
4,163,248 + PS417_19210 0.50 -0.1
4,163,248 + PS417_19210 0.50 +1.0
4,163,248 + PS417_19210 0.50 -0.5
4,163,249 - PS417_19210 0.50 -1.0
4,163,332 + PS417_19210 0.57 +0.2
4,163,332 + PS417_19210 0.57 -0.3
4,163,332 + PS417_19210 0.57 -0.5
4,163,332 + PS417_19210 0.57 -0.3
4,163,333 - PS417_19210 0.57 +0.0
4,163,333 - PS417_19210 0.57 -0.7
4,163,333 - PS417_19210 0.57 -0.5
4,163,333 - PS417_19210 0.57 -1.5
4,163,333 - PS417_19210 0.57 -1.5
4,163,405 - PS417_19210 0.63 -1.1
4,163,644 + PS417_19210 0.84 -1.0
4,163,644 + PS417_19210 0.84 -0.5
4,163,826 + +0.7
4,163,827 - +0.2
4,163,827 - -0.5
4,163,842 + -0.9
4,163,881 - -0.4
4,163,931 - +0.7
4,164,117 - PS417_19215 0.12 +1.4
4,164,425 + PS417_19215 0.32 -0.3
4,164,477 - PS417_19215 0.36 -0.5
4,164,477 - PS417_19215 0.36 -0.1
4,164,622 + PS417_19215 0.45 +0.9
4,164,623 - PS417_19215 0.45 +0.8

Or see this region's nucleotide sequence