Strain Fitness in Pseudomonas simiae WCS417 around PS417_01355

Experiment: Carbon source L-Citrulline 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01350 and PS417_01355 are separated by 411 nucleotidesPS417_01355 and PS417_01360 are separated by 202 nucleotidesPS417_01360 and PS417_01365 are separated by 20 nucleotides PS417_01350: PS417_01350 - TonB-dependent receptor, at 293,594 to 295,681 _01350 PS417_01355: PS417_01355 - membrane protein, at 296,093 to 297,409 _01355 PS417_01360: PS417_01360 - 4-oxalocrotonate tautomerase, at 297,612 to 297,815 _01360 PS417_01365: PS417_01365 - 3-oxoacyl-ACP reductase, at 297,836 to 298,537 _01365 Position (kb) 296 297 298Strain fitness (log2 ratio) -2 -1 0 1at 295.140 kb on + strand, within PS417_01350at 295.314 kb on + strand, within PS417_01350at 295.314 kb on + strand, within PS417_01350at 295.315 kb on - strand, within PS417_01350at 295.315 kb on - strand, within PS417_01350at 295.345 kb on - strand, within PS417_01350at 295.507 kb on - strandat 295.603 kb on + strandat 295.603 kb on + strandat 295.604 kb on - strandat 295.785 kb on + strandat 295.788 kb on + strandat 295.789 kb on - strandat 295.843 kb on + strandat 295.844 kb on - strandat 295.844 kb on - strandat 295.855 kb on + strandat 295.900 kb on + strandat 295.901 kb on - strandat 295.984 kb on + strandat 296.084 kb on + strandat 296.084 kb on + strandat 296.085 kb on - strandat 296.086 kb on + strandat 296.087 kb on - strandat 296.087 kb on - strandat 296.087 kb on - strandat 296.222 kb on + strandat 296.223 kb on - strandat 296.223 kb on - strandat 296.223 kb on - strandat 296.237 kb on + strand, within PS417_01355at 296.238 kb on - strand, within PS417_01355at 296.349 kb on - strand, within PS417_01355at 296.525 kb on + strand, within PS417_01355at 296.525 kb on + strand, within PS417_01355at 296.561 kb on + strand, within PS417_01355at 296.562 kb on - strandat 296.562 kb on - strand, within PS417_01355at 296.591 kb on + strand, within PS417_01355at 296.592 kb on - strand, within PS417_01355at 296.592 kb on - strand, within PS417_01355at 296.592 kb on - strand, within PS417_01355at 296.714 kb on + strand, within PS417_01355at 296.715 kb on - strand, within PS417_01355at 296.726 kb on - strand, within PS417_01355at 296.726 kb on - strand, within PS417_01355at 296.762 kb on + strand, within PS417_01355at 296.799 kb on - strand, within PS417_01355at 296.799 kb on - strand, within PS417_01355at 296.799 kb on - strand, within PS417_01355at 296.814 kb on - strand, within PS417_01355at 297.086 kb on + strand, within PS417_01355at 297.176 kb on + strand, within PS417_01355at 297.177 kb on - strand, within PS417_01355at 297.189 kb on - strand, within PS417_01355at 297.218 kb on - strand, within PS417_01355at 297.266 kb on + strand, within PS417_01355at 297.267 kb on - strand, within PS417_01355at 297.273 kb on + strand, within PS417_01355at 297.273 kb on + strand, within PS417_01355at 297.274 kb on - strand, within PS417_01355at 297.274 kb on - strand, within PS417_01355at 297.350 kb on + strandat 297.351 kb on - strandat 297.407 kb on + strandat 297.408 kb on - strandat 297.408 kb on - strandat 297.469 kb on + strandat 297.518 kb on + strandat 297.518 kb on + strandat 297.519 kb on - strandat 297.555 kb on + strandat 297.555 kb on + strandat 297.555 kb on + strandat 297.651 kb on - strand, within PS417_01360at 297.771 kb on + strand, within PS417_01360at 298.100 kb on + strandat 298.154 kb on + strand, within PS417_01365at 298.154 kb on + strand, within PS417_01365

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM
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295,140 + PS417_01350 0.74 -0.2
295,314 + PS417_01350 0.82 +0.1
295,314 + PS417_01350 0.82 +0.9
295,315 - PS417_01350 0.82 -0.1
295,315 - PS417_01350 0.82 -0.1
295,345 - PS417_01350 0.84 +0.6
295,507 - -0.7
295,603 + -0.2
295,603 + -1.2
295,604 - -0.7
295,785 + -0.6
295,788 + -0.6
295,789 - -0.1
295,843 + +0.0
295,844 - +1.6
295,844 - -2.0
295,855 + +0.5
295,900 + +0.1
295,901 - +0.0
295,984 + -1.0
296,084 + +0.1
296,084 + +0.8
296,085 - +0.1
296,086 + -0.1
296,087 - -0.7
296,087 - -0.2
296,087 - -1.2
296,222 + +0.7
296,223 - -0.2
296,223 - +0.7
296,223 - +0.1
296,237 + PS417_01355 0.11 -0.2
296,238 - PS417_01355 0.11 -1.6
296,349 - PS417_01355 0.19 -0.2
296,525 + PS417_01355 0.33 -1.1
296,525 + PS417_01355 0.33 -1.4
296,561 + PS417_01355 0.36 -0.2
296,562 - -0.4
296,562 - PS417_01355 0.36 -1.0
296,591 + PS417_01355 0.38 +0.1
296,592 - PS417_01355 0.38 -0.7
296,592 - PS417_01355 0.38 -0.4
296,592 - PS417_01355 0.38 -0.8
296,714 + PS417_01355 0.47 -0.1
296,715 - PS417_01355 0.47 -1.4
296,726 - PS417_01355 0.48 +0.0
296,726 - PS417_01355 0.48 -0.1
296,762 + PS417_01355 0.51 -1.6
296,799 - PS417_01355 0.54 -0.4
296,799 - PS417_01355 0.54 -0.6
296,799 - PS417_01355 0.54 -1.1
296,814 - PS417_01355 0.55 -1.1
297,086 + PS417_01355 0.75 -0.2
297,176 + PS417_01355 0.82 +1.1
297,177 - PS417_01355 0.82 +0.4
297,189 - PS417_01355 0.83 +0.5
297,218 - PS417_01355 0.85 -0.4
297,266 + PS417_01355 0.89 -0.0
297,267 - PS417_01355 0.89 +0.4
297,273 + PS417_01355 0.90 +0.7
297,273 + PS417_01355 0.90 +0.1
297,274 - PS417_01355 0.90 +0.6
297,274 - PS417_01355 0.90 -1.1
297,350 + -1.4
297,351 - -0.0
297,407 + -0.6
297,408 - -1.0
297,408 - -0.9
297,469 + -0.9
297,518 + +0.3
297,518 + -0.2
297,519 - +0.6
297,555 + -0.0
297,555 + -1.3
297,555 + +0.0
297,651 - PS417_01360 0.19 +0.1
297,771 + PS417_01360 0.78 -0.4
298,100 + +1.2
298,154 + PS417_01365 0.45 +0.4
298,154 + PS417_01365 0.45 -1.9

Or see this region's nucleotide sequence