Strain Fitness in Pseudomonas simiae WCS417 around PS417_13015

Experiment: Carbon source L-Citrulline 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13005 and PS417_13010 are separated by 14 nucleotidesPS417_13010 and PS417_13015 overlap by 4 nucleotidesPS417_13015 and PS417_13020 are separated by 308 nucleotides PS417_13005: PS417_13005 - Asp/Glu racemase, at 2,841,188 to 2,841,940 _13005 PS417_13010: PS417_13010 - alpha/beta hydrolase, at 2,841,955 to 2,842,752 _13010 PS417_13015: PS417_13015 - 6-hydroxynicotinate 3-monooxygenase, at 2,842,749 to 2,843,882 _13015 PS417_13020: PS417_13020 - 2,5-dihydroxypyridine 5,6-dioxygenase, at 2,844,191 to 2,845,243 _13020 Position (kb) 2842 2843 2844Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2841.794 kb on + strand, within PS417_13005at 2841.956 kb on + strandat 2842.326 kb on - strand, within PS417_13010at 2842.469 kb on + strand, within PS417_13010at 2842.470 kb on - strand, within PS417_13010at 2842.792 kb on + strandat 2842.798 kb on + strandat 2842.892 kb on - strand, within PS417_13015at 2843.221 kb on + strand, within PS417_13015at 2843.222 kb on - strand, within PS417_13015at 2843.222 kb on - strand, within PS417_13015at 2843.224 kb on + strand, within PS417_13015at 2843.224 kb on + strand, within PS417_13015at 2843.224 kb on + strand, within PS417_13015at 2843.227 kb on + strand, within PS417_13015at 2843.228 kb on - strand, within PS417_13015at 2843.252 kb on - strand, within PS417_13015at 2843.252 kb on - strand, within PS417_13015at 2843.252 kb on - strand, within PS417_13015at 2843.368 kb on + strand, within PS417_13015at 2843.447 kb on - strand, within PS417_13015at 2843.590 kb on + strand, within PS417_13015at 2843.591 kb on - strand, within PS417_13015at 2843.785 kb on + strandat 2843.785 kb on + strandat 2843.786 kb on - strandat 2843.815 kb on - strandat 2844.704 kb on + strand, within PS417_13020at 2844.854 kb on + strand, within PS417_13020at 2844.854 kb on + strandat 2844.855 kb on - strand, within PS417_13020

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM
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2,841,794 + PS417_13005 0.80 -0.0
2,841,956 + -0.1
2,842,326 - PS417_13010 0.46 +0.8
2,842,469 + PS417_13010 0.64 -1.1
2,842,470 - PS417_13010 0.65 -1.5
2,842,792 + -0.7
2,842,798 + +0.5
2,842,892 - PS417_13015 0.13 +0.3
2,843,221 + PS417_13015 0.42 -0.4
2,843,222 - PS417_13015 0.42 +1.5
2,843,222 - PS417_13015 0.42 -0.7
2,843,224 + PS417_13015 0.42 +1.2
2,843,224 + PS417_13015 0.42 +1.6
2,843,224 + PS417_13015 0.42 +0.1
2,843,227 + PS417_13015 0.42 +0.4
2,843,228 - PS417_13015 0.42 +1.5
2,843,252 - PS417_13015 0.44 +1.8
2,843,252 - PS417_13015 0.44 +0.5
2,843,252 - PS417_13015 0.44 +0.5
2,843,368 + PS417_13015 0.55 +0.3
2,843,447 - PS417_13015 0.62 -0.2
2,843,590 + PS417_13015 0.74 -2.0
2,843,591 - PS417_13015 0.74 -0.2
2,843,785 + +2.8
2,843,785 + -0.2
2,843,786 - +0.2
2,843,815 - +0.5
2,844,704 + PS417_13020 0.49 -1.3
2,844,854 + PS417_13020 0.63 +0.3
2,844,854 + -1.4
2,844,855 - PS417_13020 0.63 -1.4

Or see this region's nucleotide sequence