Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11575 and PS417_11580 are separated by 242 nucleotides PS417_11580 and PS417_11585 are separated by 53 nucleotides PS417_11585 and PS417_11590 overlap by 26 nucleotides
PS417_11575: PS417_11575 - spermidine/putrescine ABC transporter ATPase, at 2,487,509 to 2,488,537
_11575
PS417_11580: PS417_11580 - IclR family transcriptional regulator, at 2,488,780 to 2,489,610
_11580
PS417_11585: PS417_11585 - LuxR family transcriptional regulator, at 2,489,664 to 2,490,329
_11585
PS417_11590: PS417_11590 - ATPase, at 2,490,304 to 2,493,687
_11590
Position (kb)
2488
2489
2490 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2487.782 kb on + strand, within PS417_11575 at 2487.783 kb on - strand at 2487.783 kb on - strand, within PS417_11575 at 2488.373 kb on + strand at 2488.373 kb on + strand, within PS417_11575 at 2488.373 kb on + strand, within PS417_11575 at 2488.501 kb on - strand at 2488.680 kb on + strand at 2488.732 kb on - strand at 2488.761 kb on - strand at 2489.323 kb on + strand at 2489.725 kb on + strand at 2489.725 kb on + strand at 2489.726 kb on - strand at 2489.826 kb on + strand, within PS417_11585 at 2490.001 kb on + strand, within PS417_11585 at 2490.001 kb on + strand, within PS417_11585 at 2490.225 kb on - strand, within PS417_11585
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 2,487,782 + PS417_11575 0.27 +0.1 2,487,783 - -0.5 2,487,783 - PS417_11575 0.27 -0.2 2,488,373 + +1.3 2,488,373 + PS417_11575 0.84 -0.3 2,488,373 + PS417_11575 0.84 -0.1 2,488,501 - +0.8 2,488,680 + -1.9 2,488,732 - -0.4 2,488,761 - -1.4 2,489,323 + +1.3 2,489,725 + -1.4 2,489,725 + -1.2 2,489,726 - +0.3 2,489,826 + PS417_11585 0.24 +0.8 2,490,001 + PS417_11585 0.51 +3.6 2,490,001 + PS417_11585 0.51 +1.5 2,490,225 - PS417_11585 0.84 +0.3
Or see this region's nucleotide sequence