Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_11145 and PS417_11150 are separated by 111 nucleotides PS417_11150 and PS417_11155 are separated by 170 nucleotides
PS417_11145: PS417_11145 - peptide ABC transporter ATP-binding protein, at 2,388,755 to 2,390,383
_11145
PS417_11150: PS417_11150 - porin, at 2,390,495 to 2,391,778
_11150
PS417_11155: PS417_11155 - GntR family transcriptional regulator, at 2,391,949 to 2,392,827
_11155
Position (kb)
2390
2391
2392 Strain fitness (log2 ratio)
-2
-1
0
1 at 2390.166 kb on - strand, within PS417_11145 at 2390.382 kb on - strand at 2390.454 kb on + strand at 2390.621 kb on + strand at 2390.622 kb on - strand at 2390.840 kb on + strand, within PS417_11150 at 2391.114 kb on - strand, within PS417_11150 at 2391.191 kb on + strand, within PS417_11150 at 2391.218 kb on + strand, within PS417_11150 at 2391.218 kb on + strand, within PS417_11150 at 2391.219 kb on - strand, within PS417_11150 at 2391.428 kb on - strand, within PS417_11150 at 2391.431 kb on + strand, within PS417_11150 at 2391.431 kb on + strand, within PS417_11150 at 2391.431 kb on + strand, within PS417_11150 at 2391.431 kb on + strand, within PS417_11150 at 2391.448 kb on + strand, within PS417_11150 at 2391.453 kb on - strand, within PS417_11150 at 2391.519 kb on - strand, within PS417_11150 at 2391.650 kb on + strand at 2391.716 kb on - strand at 2391.719 kb on + strand at 2391.719 kb on + strand at 2391.720 kb on - strand at 2391.844 kb on + strand at 2391.845 kb on - strand at 2391.845 kb on - strand at 2391.880 kb on - strand at 2392.673 kb on + strand, within PS417_11155
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 2,390,166 - PS417_11145 0.87 -0.7 2,390,382 - -2.3 2,390,454 + -0.4 2,390,621 + -0.7 2,390,622 - +0.6 2,390,840 + PS417_11150 0.27 -0.7 2,391,114 - PS417_11150 0.48 -1.7 2,391,191 + PS417_11150 0.54 -0.5 2,391,218 + PS417_11150 0.56 -0.2 2,391,218 + PS417_11150 0.56 -0.7 2,391,219 - PS417_11150 0.56 -1.2 2,391,428 - PS417_11150 0.73 -0.5 2,391,431 + PS417_11150 0.73 -1.7 2,391,431 + PS417_11150 0.73 -1.6 2,391,431 + PS417_11150 0.73 -1.0 2,391,431 + PS417_11150 0.73 -0.3 2,391,448 + PS417_11150 0.74 +1.3 2,391,453 - PS417_11150 0.75 -0.8 2,391,519 - PS417_11150 0.80 -1.8 2,391,650 + +1.1 2,391,716 - -0.1 2,391,719 + -1.5 2,391,719 + -0.5 2,391,720 - -0.5 2,391,844 + -0.5 2,391,845 - -0.7 2,391,845 - -1.8 2,391,880 - -0.3 2,392,673 + PS417_11155 0.82 +1.5
Or see this region's nucleotide sequence