Strain Fitness in Pseudomonas simiae WCS417 around PS417_11150

Experiment: Carbon source L-Citrulline 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11145 and PS417_11150 are separated by 111 nucleotidesPS417_11150 and PS417_11155 are separated by 170 nucleotides PS417_11145: PS417_11145 - peptide ABC transporter ATP-binding protein, at 2,388,755 to 2,390,383 _11145 PS417_11150: PS417_11150 - porin, at 2,390,495 to 2,391,778 _11150 PS417_11155: PS417_11155 - GntR family transcriptional regulator, at 2,391,949 to 2,392,827 _11155 Position (kb) 2390 2391 2392Strain fitness (log2 ratio) -2 -1 0 1at 2390.166 kb on - strand, within PS417_11145at 2390.382 kb on - strandat 2390.454 kb on + strandat 2390.621 kb on + strandat 2390.622 kb on - strandat 2390.840 kb on + strand, within PS417_11150at 2391.114 kb on - strand, within PS417_11150at 2391.191 kb on + strand, within PS417_11150at 2391.218 kb on + strand, within PS417_11150at 2391.218 kb on + strand, within PS417_11150at 2391.219 kb on - strand, within PS417_11150at 2391.428 kb on - strand, within PS417_11150at 2391.431 kb on + strand, within PS417_11150at 2391.431 kb on + strand, within PS417_11150at 2391.431 kb on + strand, within PS417_11150at 2391.431 kb on + strand, within PS417_11150at 2391.448 kb on + strand, within PS417_11150at 2391.453 kb on - strand, within PS417_11150at 2391.519 kb on - strand, within PS417_11150at 2391.650 kb on + strandat 2391.716 kb on - strandat 2391.719 kb on + strandat 2391.719 kb on + strandat 2391.720 kb on - strandat 2391.844 kb on + strandat 2391.845 kb on - strandat 2391.845 kb on - strandat 2391.880 kb on - strandat 2392.673 kb on + strand, within PS417_11155

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM
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2,390,166 - PS417_11145 0.87 -0.7
2,390,382 - -2.3
2,390,454 + -0.4
2,390,621 + -0.7
2,390,622 - +0.6
2,390,840 + PS417_11150 0.27 -0.7
2,391,114 - PS417_11150 0.48 -1.7
2,391,191 + PS417_11150 0.54 -0.5
2,391,218 + PS417_11150 0.56 -0.2
2,391,218 + PS417_11150 0.56 -0.7
2,391,219 - PS417_11150 0.56 -1.2
2,391,428 - PS417_11150 0.73 -0.5
2,391,431 + PS417_11150 0.73 -1.7
2,391,431 + PS417_11150 0.73 -1.6
2,391,431 + PS417_11150 0.73 -1.0
2,391,431 + PS417_11150 0.73 -0.3
2,391,448 + PS417_11150 0.74 +1.3
2,391,453 - PS417_11150 0.75 -0.8
2,391,519 - PS417_11150 0.80 -1.8
2,391,650 + +1.1
2,391,716 - -0.1
2,391,719 + -1.5
2,391,719 + -0.5
2,391,720 - -0.5
2,391,844 + -0.5
2,391,845 - -0.7
2,391,845 - -1.8
2,391,880 - -0.3
2,392,673 + PS417_11155 0.82 +1.5

Or see this region's nucleotide sequence