Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_10660 and PS417_10665 are separated by 134 nucleotides PS417_10665 and PS417_10670 overlap by 4 nucleotides PS417_10670 and PS417_10675 are separated by 255 nucleotides
PS417_10660: PS417_10660 - histidine kinase, at 2,275,191 to 2,278,805
_10660
PS417_10665: PS417_10665 - hypothetical protein, at 2,278,940 to 2,279,365
_10665
PS417_10670: PS417_10670 - 2,5-diketo-D-gluconic acid reductase, at 2,279,362 to 2,280,180
_10670
PS417_10675: PS417_10675 - TetR family transcriptional regulator, at 2,280,436 to 2,281,074
_10675
Position (kb)
2279
2280
2281 Strain fitness (log2 ratio)
-2
-1
0
1 at 2278.484 kb on + strand at 2278.846 kb on - strand at 2278.860 kb on + strand at 2278.884 kb on - strand at 2278.884 kb on - strand at 2279.174 kb on + strand, within PS417_10665 at 2279.175 kb on - strand, within PS417_10665 at 2279.633 kb on + strand, within PS417_10670 at 2279.633 kb on + strand, within PS417_10670 at 2279.633 kb on + strand, within PS417_10670 at 2279.634 kb on - strand, within PS417_10670 at 2279.634 kb on - strand, within PS417_10670 at 2279.897 kb on + strand, within PS417_10670 at 2280.050 kb on + strand, within PS417_10670 at 2280.316 kb on - strand at 2280.397 kb on + strand at 2280.398 kb on - strand at 2280.836 kb on - strand, within PS417_10675
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM remove 2,278,484 + -0.5 2,278,846 - -0.1 2,278,860 + +0.1 2,278,884 - -0.0 2,278,884 - +0.8 2,279,174 + PS417_10665 0.55 -0.4 2,279,175 - PS417_10665 0.55 -1.0 2,279,633 + PS417_10670 0.33 -1.6 2,279,633 + PS417_10670 0.33 -1.6 2,279,633 + PS417_10670 0.33 +0.0 2,279,634 - PS417_10670 0.33 -1.4 2,279,634 - PS417_10670 0.33 -0.0 2,279,897 + PS417_10670 0.65 -0.4 2,280,050 + PS417_10670 0.84 -2.1 2,280,316 - +0.1 2,280,397 + +0.3 2,280,398 - -0.1 2,280,836 - PS417_10675 0.63 -0.2
Or see this region's nucleotide sequence