Strain Fitness in Pseudomonas simiae WCS417 around PS417_07870

Experiment: Carbon source L-Citrulline 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_07860 and PS417_07865 overlap by 4 nucleotidesPS417_07865 and PS417_07870 overlap by 26 nucleotidesPS417_07870 and PS417_07875 are separated by 598 nucleotides PS417_07860: PS417_07860 - hypothetical protein, at 1,723,665 to 1,724,480 _07860 PS417_07865: PS417_07865 - hypothetical protein, at 1,724,477 to 1,724,872 _07865 PS417_07870: PS417_07870 - hypothetical protein, at 1,724,847 to 1,725,527 _07870 PS417_07875: PS417_07875 - hypothetical protein, at 1,726,126 to 1,727,199 _07875 Position (kb) 1724 1725 1726Strain fitness (log2 ratio) -1 0 1at 1723.857 kb on + strand, within PS417_07860at 1723.860 kb on - strand, within PS417_07860at 1723.991 kb on + strand, within PS417_07860at 1724.109 kb on + strand, within PS417_07860at 1724.110 kb on - strand, within PS417_07860at 1724.118 kb on - strand, within PS417_07860at 1724.476 kb on + strandat 1724.634 kb on + strand, within PS417_07865at 1724.635 kb on - strand, within PS417_07865at 1724.846 kb on + strandat 1724.892 kb on - strandat 1725.006 kb on + strand, within PS417_07870at 1725.202 kb on - strand, within PS417_07870at 1725.229 kb on + strand, within PS417_07870at 1725.230 kb on - strand, within PS417_07870at 1725.230 kb on - strandat 1725.585 kb on - strandat 1725.634 kb on - strandat 1725.639 kb on + strandat 1725.640 kb on - strandat 1725.750 kb on - strandat 1725.801 kb on + strandat 1725.801 kb on + strandat 1725.802 kb on - strandat 1725.802 kb on - strandat 1726.073 kb on + strandat 1726.204 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Citrulline 5 mM
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1,723,857 + PS417_07860 0.24 +0.0
1,723,860 - PS417_07860 0.24 +0.4
1,723,991 + PS417_07860 0.40 +0.2
1,724,109 + PS417_07860 0.54 +1.2
1,724,110 - PS417_07860 0.55 -0.1
1,724,118 - PS417_07860 0.56 +0.1
1,724,476 + +0.9
1,724,634 + PS417_07865 0.40 +0.1
1,724,635 - PS417_07865 0.40 +0.0
1,724,846 + +0.2
1,724,892 - -1.1
1,725,006 + PS417_07870 0.23 -1.0
1,725,202 - PS417_07870 0.52 -0.5
1,725,229 + PS417_07870 0.56 -0.8
1,725,230 - PS417_07870 0.56 -1.7
1,725,230 - +1.5
1,725,585 - -0.3
1,725,634 - +0.0
1,725,639 + +0.9
1,725,640 - -1.1
1,725,750 - +0.0
1,725,801 + -1.3
1,725,801 + -0.6
1,725,802 - +0.2
1,725,802 - -0.6
1,726,073 + +0.2
1,726,204 + +0.2

Or see this region's nucleotide sequence