Strain Fitness in Pseudomonas simiae WCS417 around PS417_07870
Experiment: Carbon source L-Citrulline 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source L-Citrulline 5 mM |
---|---|---|---|---|---|
remove | |||||
1,723,857 | + | PS417_07860 | 0.24 | +0.0 | |
1,723,860 | - | PS417_07860 | 0.24 | +0.4 | |
1,723,991 | + | PS417_07860 | 0.40 | +0.2 | |
1,724,109 | + | PS417_07860 | 0.54 | +1.2 | |
1,724,110 | - | PS417_07860 | 0.55 | -0.1 | |
1,724,118 | - | PS417_07860 | 0.56 | +0.1 | |
1,724,476 | + | +0.9 | |||
1,724,634 | + | PS417_07865 | 0.40 | +0.1 | |
1,724,635 | - | PS417_07865 | 0.40 | +0.0 | |
1,724,846 | + | +0.2 | |||
1,724,892 | - | -1.1 | |||
1,725,006 | + | PS417_07870 | 0.23 | -1.0 | |
1,725,202 | - | PS417_07870 | 0.52 | -0.5 | |
1,725,229 | + | PS417_07870 | 0.56 | -0.8 | |
1,725,230 | - | PS417_07870 | 0.56 | -1.7 | |
1,725,230 | - | +1.5 | |||
1,725,585 | - | -0.3 | |||
1,725,634 | - | +0.0 | |||
1,725,639 | + | +0.9 | |||
1,725,640 | - | -1.1 | |||
1,725,750 | - | +0.0 | |||
1,725,801 | + | -1.3 | |||
1,725,801 | + | -0.6 | |||
1,725,802 | - | +0.2 | |||
1,725,802 | - | -0.6 | |||
1,726,073 | + | +0.2 | |||
1,726,204 | + | +0.2 |
Or see this region's nucleotide sequence