Strain Fitness in Pseudomonas simiae WCS417 around PS417_03640

Experiment: Carbon source L-Ornithine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_03625 and PS417_03630 are separated by 136 nucleotidesPS417_03630 and PS417_03635 are separated by 137 nucleotidesPS417_03635 and PS417_03640 overlap by 8 nucleotidesPS417_03640 and PS417_03645 overlap by 14 nucleotidesPS417_03645 and PS417_03650 overlap by 4 nucleotides PS417_03625: PS417_03625 - lipid A 3-O-deacylase, at 823,587 to 824,105 _03625 PS417_03630: PS417_03630 - hypothetical protein, at 824,242 to 824,463 _03630 PS417_03635: PS417_03635 - membrane protein, at 824,601 to 825,080 _03635 PS417_03640: PS417_03640 - cyclopropane-fatty-acyl-phospholipid synthase, at 825,073 to 826,344 _03640 PS417_03645: PS417_03645 - hypothetical protein, at 826,331 to 827,140 _03645 PS417_03650: PS417_03650 - FAD-dependent oxidoreductase, at 827,137 to 828,384 _03650 Position (kb) 825 826 827Strain fitness (log2 ratio) -2 -1 0 1 2at 824.076 kb on + strandat 824.076 kb on + strandat 824.077 kb on - strandat 824.088 kb on + strandat 824.089 kb on - strandat 824.089 kb on - strandat 824.104 kb on - strandat 824.170 kb on + strandat 824.185 kb on + strandat 824.186 kb on - strandat 824.221 kb on - strandat 824.340 kb on + strand, within PS417_03630at 824.340 kb on + strand, within PS417_03630at 824.341 kb on - strand, within PS417_03630at 824.341 kb on - strand, within PS417_03630at 824.428 kb on - strand, within PS417_03630at 824.429 kb on + strand, within PS417_03630at 824.560 kb on - strandat 824.560 kb on - strandat 824.575 kb on + strandat 824.576 kb on - strandat 824.625 kb on + strandat 824.625 kb on + strandat 824.911 kb on - strand, within PS417_03635at 824.959 kb on - strand, within PS417_03635at 825.075 kb on - strandat 825.185 kb on + strandat 825.209 kb on + strand, within PS417_03640at 825.210 kb on - strand, within PS417_03640at 825.210 kb on - strand, within PS417_03640at 825.390 kb on + strand, within PS417_03640at 825.391 kb on - strand, within PS417_03640at 825.392 kb on + strand, within PS417_03640at 825.393 kb on - strand, within PS417_03640at 825.702 kb on - strand, within PS417_03640at 825.861 kb on - strand, within PS417_03640at 825.861 kb on - strand, within PS417_03640at 825.911 kb on + strand, within PS417_03640at 825.911 kb on + strand, within PS417_03640at 825.911 kb on + strand, within PS417_03640at 825.911 kb on + strand, within PS417_03640at 826.024 kb on + strand, within PS417_03640at 826.024 kb on + strand, within PS417_03640at 826.024 kb on + strand, within PS417_03640at 826.025 kb on - strand, within PS417_03640at 826.198 kb on + strand, within PS417_03640at 826.243 kb on + strandat 826.243 kb on + strandat 826.244 kb on - strandat 826.244 kb on - strandat 826.244 kb on - strandat 826.244 kb on - strandat 826.449 kb on + strand, within PS417_03645at 826.449 kb on + strand, within PS417_03645at 826.449 kb on + strand, within PS417_03645at 826.450 kb on - strand, within PS417_03645at 826.450 kb on - strandat 826.497 kb on + strand, within PS417_03645at 826.498 kb on - strand, within PS417_03645at 826.629 kb on + strand, within PS417_03645at 826.729 kb on - strand, within PS417_03645at 826.729 kb on - strand, within PS417_03645at 826.806 kb on + strand, within PS417_03645at 826.807 kb on - strand, within PS417_03645at 826.826 kb on - strand, within PS417_03645at 826.882 kb on + strand, within PS417_03645at 826.883 kb on - strand, within PS417_03645at 826.883 kb on - strand, within PS417_03645at 826.959 kb on + strand, within PS417_03645at 827.225 kb on + strandat 827.226 kb on - strandat 827.248 kb on + strandat 827.291 kb on + strand, within PS417_03650at 827.291 kb on + strand, within PS417_03650at 827.292 kb on - strand, within PS417_03650at 827.292 kb on - strand, within PS417_03650at 827.306 kb on + strand, within PS417_03650at 827.306 kb on + strand, within PS417_03650at 827.306 kb on + strand, within PS417_03650at 827.307 kb on - strand, within PS417_03650at 827.307 kb on - strand, within PS417_03650

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM
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824,076 + -0.3
824,076 + +0.0
824,077 - +1.0
824,088 + +0.6
824,089 - -0.5
824,089 - -0.2
824,104 - +0.6
824,170 + -0.2
824,185 + -0.6
824,186 - -1.0
824,221 - +1.1
824,340 + PS417_03630 0.44 +0.3
824,340 + PS417_03630 0.44 +0.3
824,341 - PS417_03630 0.45 -0.4
824,341 - PS417_03630 0.45 +0.1
824,428 - PS417_03630 0.84 +0.4
824,429 + PS417_03630 0.84 +0.9
824,560 - +0.1
824,560 - -1.4
824,575 + +0.3
824,576 - +1.4
824,625 + -0.3
824,625 + +1.9
824,911 - PS417_03635 0.65 -1.7
824,959 - PS417_03635 0.75 +0.2
825,075 - +0.4
825,185 + -1.0
825,209 + PS417_03640 0.11 -2.2
825,210 - PS417_03640 0.11 -0.8
825,210 - PS417_03640 0.11 +0.6
825,390 + PS417_03640 0.25 +0.2
825,391 - PS417_03640 0.25 +0.1
825,392 + PS417_03640 0.25 -0.3
825,393 - PS417_03640 0.25 +0.0
825,702 - PS417_03640 0.49 -2.4
825,861 - PS417_03640 0.62 -1.1
825,861 - PS417_03640 0.62 -0.3
825,911 + PS417_03640 0.66 -0.9
825,911 + PS417_03640 0.66 +0.0
825,911 + PS417_03640 0.66 +0.2
825,911 + PS417_03640 0.66 -0.4
826,024 + PS417_03640 0.75 -0.7
826,024 + PS417_03640 0.75 +0.6
826,024 + PS417_03640 0.75 -0.4
826,025 - PS417_03640 0.75 -0.2
826,198 + PS417_03640 0.88 -0.3
826,243 + -0.8
826,243 + -0.1
826,244 - -1.6
826,244 - -1.0
826,244 - +0.4
826,244 - -0.1
826,449 + PS417_03645 0.15 +0.0
826,449 + PS417_03645 0.15 -0.3
826,449 + PS417_03645 0.15 -0.2
826,450 - PS417_03645 0.15 +1.1
826,450 - -1.0
826,497 + PS417_03645 0.20 -1.2
826,498 - PS417_03645 0.21 -0.7
826,629 + PS417_03645 0.37 -0.5
826,729 - PS417_03645 0.49 -1.6
826,729 - PS417_03645 0.49 -0.6
826,806 + PS417_03645 0.59 -1.1
826,807 - PS417_03645 0.59 +0.4
826,826 - PS417_03645 0.61 -0.4
826,882 + PS417_03645 0.68 -0.4
826,883 - PS417_03645 0.68 +0.1
826,883 - PS417_03645 0.68 -0.4
826,959 + PS417_03645 0.78 +0.0
827,225 + -0.4
827,226 - -0.5
827,248 + +0.3
827,291 + PS417_03650 0.12 +1.2
827,291 + PS417_03650 0.12 +0.2
827,292 - PS417_03650 0.12 +0.5
827,292 - PS417_03650 0.12 -0.7
827,306 + PS417_03650 0.14 -1.8
827,306 + PS417_03650 0.14 +0.9
827,306 + PS417_03650 0.14 +0.1
827,307 - PS417_03650 0.14 -0.0
827,307 - PS417_03650 0.14 -1.0

Or see this region's nucleotide sequence