Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02695 and PS417_02700 are separated by 22 nucleotides PS417_02700 and PS417_02705 are separated by 13 nucleotides PS417_02705 and PS417_02710 overlap by 4 nucleotides PS417_02710 and PS417_02715 are separated by 276 nucleotides
PS417_02695: PS417_02695 - protein hupE, at 616,962 to 617,534
_02695
PS417_02700: PS417_02700 - urease accessory protein UreG, at 617,557 to 618,171
_02700
PS417_02705: PS417_02705 - urease accessory protein UreF, at 618,185 to 618,859
_02705
PS417_02710: PS417_02710 - Urease maturation and nickel insertion protein UreE (from data) , at 618,856 to 619,356
_02710
PS417_02715: PS417_02715 - hypothetical protein, at 619,633 to 620,130
_02715
Position (kb)
618
619 Strain fitness (log2 ratio)
-1
0
1
2
3 at 617.311 kb on - strand, within PS417_02695 at 617.807 kb on + strand, within PS417_02700 at 617.808 kb on - strand, within PS417_02700 at 617.808 kb on - strand, within PS417_02700 at 618.044 kb on + strand, within PS417_02700 at 618.044 kb on + strand, within PS417_02700 at 618.045 kb on - strand, within PS417_02700 at 618.075 kb on - strand at 618.171 kb on + strand at 618.171 kb on + strand at 618.171 kb on + strand at 618.171 kb on + strand at 618.171 kb on + strand at 618.172 kb on - strand at 618.172 kb on - strand at 618.172 kb on - strand at 618.172 kb on - strand at 618.197 kb on + strand at 618.582 kb on + strand, within PS417_02705 at 618.583 kb on - strand, within PS417_02705 at 618.677 kb on + strand, within PS417_02705 at 618.796 kb on - strand at 618.898 kb on + strand at 619.022 kb on + strand, within PS417_02710 at 619.022 kb on + strand, within PS417_02710 at 619.023 kb on - strand, within PS417_02710 at 619.023 kb on - strand, within PS417_02710 at 619.089 kb on - strand, within PS417_02710 at 619.163 kb on - strand, within PS417_02710 at 619.372 kb on + strand at 619.373 kb on - strand at 619.390 kb on + strand at 619.391 kb on - strand at 619.391 kb on - strand at 619.436 kb on + strand at 619.436 kb on + strand at 619.436 kb on + strand at 619.436 kb on + strand at 619.579 kb on + strand at 619.579 kb on + strand at 619.579 kb on + strand at 619.580 kb on - strand at 619.595 kb on - strand at 619.595 kb on - strand at 619.613 kb on - strand at 619.613 kb on - strand at 619.670 kb on + strand at 619.670 kb on + strand at 619.785 kb on + strand, within PS417_02715 at 619.792 kb on + strand, within PS417_02715 at 619.792 kb on + strand, within PS417_02715 at 619.793 kb on - strand, within PS417_02715 at 619.793 kb on - strand at 619.849 kb on + strand, within PS417_02715
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 617,311 - PS417_02695 0.61 +0.3 617,807 + PS417_02700 0.41 +0.8 617,808 - PS417_02700 0.41 -0.4 617,808 - PS417_02700 0.41 -0.5 618,044 + PS417_02700 0.79 +0.3 618,044 + PS417_02700 0.79 -0.7 618,045 - PS417_02700 0.79 -0.7 618,075 - +3.3 618,171 + -0.1 618,171 + -0.4 618,171 + -0.4 618,171 + -0.0 618,171 + -0.7 618,172 - +1.1 618,172 - -0.8 618,172 - +0.3 618,172 - -0.4 618,197 + -0.4 618,582 + PS417_02705 0.59 -0.5 618,583 - PS417_02705 0.59 +0.1 618,677 + PS417_02705 0.73 -1.2 618,796 - -1.1 618,898 + -0.5 619,022 + PS417_02710 0.33 +0.3 619,022 + PS417_02710 0.33 -1.1 619,023 - PS417_02710 0.33 +0.0 619,023 - PS417_02710 0.33 -0.9 619,089 - PS417_02710 0.47 -0.6 619,163 - PS417_02710 0.61 +1.7 619,372 + -0.5 619,373 - +0.6 619,390 + -0.2 619,391 - -0.6 619,391 - +0.7 619,436 + -0.7 619,436 + +0.5 619,436 + -0.1 619,436 + +0.5 619,579 + +0.0 619,579 + +0.4 619,579 + -0.0 619,580 - -0.3 619,595 - +0.0 619,595 - +0.0 619,613 - -0.2 619,613 - -0.5 619,670 + +0.2 619,670 + -0.5 619,785 + PS417_02715 0.31 +1.1 619,792 + PS417_02715 0.32 +0.7 619,792 + PS417_02715 0.32 +0.1 619,793 - PS417_02715 0.32 -0.5 619,793 - +0.1 619,849 + PS417_02715 0.43 +0.1
Or see this region's nucleotide sequence