Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17925 and PS417_17930 are separated by 236 nucleotides PS417_17930 and PS417_17935 overlap by 26 nucleotides PS417_17935 and PS417_17940 are separated by 88 nucleotides
PS417_17925: PS417_17925 - acyl-CoA dehydrogenase, at 3,911,280 to 3,912,449
_17925
PS417_17930: PS417_17930 - aldehyde dehydrogenase, at 3,912,686 to 3,914,173
_17930
PS417_17935: PS417_17935 - endoribonuclease L-PSP, at 3,914,148 to 3,914,570
_17935
PS417_17940: PS417_17940 - sorbosone dehydrogenase, at 3,914,659 to 3,915,999
_17940
Position (kb)
3912
3913
3914
3915 Strain fitness (log2 ratio)
-2
-1
0
1 at 3911.755 kb on + strand, within PS417_17925 at 3912.463 kb on + strand at 3912.463 kb on + strand at 3912.463 kb on + strand at 3912.467 kb on - strand at 3913.061 kb on + strand, within PS417_17930 at 3913.061 kb on + strand, within PS417_17930 at 3913.347 kb on + strand, within PS417_17930 at 3913.823 kb on + strand, within PS417_17930 at 3914.090 kb on - strand at 3914.262 kb on - strand, within PS417_17935 at 3914.330 kb on - strand, within PS417_17935 at 3914.480 kb on + strand, within PS417_17935 at 3914.480 kb on + strand at 3914.480 kb on + strand, within PS417_17935 at 3914.480 kb on + strand, within PS417_17935 at 3915.034 kb on + strand, within PS417_17940 at 3915.034 kb on + strand, within PS417_17940 at 3915.056 kb on + strand, within PS417_17940 at 3915.057 kb on - strand, within PS417_17940 at 3915.074 kb on + strand, within PS417_17940 at 3915.075 kb on - strand, within PS417_17940
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM remove 3,911,755 + PS417_17925 0.41 -0.1 3,912,463 + +0.8 3,912,463 + +0.0 3,912,463 + +0.9 3,912,467 - -0.5 3,913,061 + PS417_17930 0.25 -1.8 3,913,061 + PS417_17930 0.25 +0.5 3,913,347 + PS417_17930 0.44 -0.3 3,913,823 + PS417_17930 0.76 -0.8 3,914,090 - -0.2 3,914,262 - PS417_17935 0.27 -0.6 3,914,330 - PS417_17935 0.43 -2.1 3,914,480 + PS417_17935 0.78 -0.3 3,914,480 + -1.0 3,914,480 + PS417_17935 0.78 -1.5 3,914,480 + PS417_17935 0.78 +0.6 3,915,034 + PS417_17940 0.28 +0.3 3,915,034 + PS417_17940 0.28 -0.7 3,915,056 + PS417_17940 0.30 -0.6 3,915,057 - PS417_17940 0.30 -0.1 3,915,074 + PS417_17940 0.31 +0.1 3,915,075 - PS417_17940 0.31 -0.1
Or see this region's nucleotide sequence