Strain Fitness in Pseudomonas simiae WCS417 around PS417_15710
Experiment: Carbon source L-Ornithine 5 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source L-Ornithine 5 mM |
---|---|---|---|---|---|
remove | |||||
3,441,000 | + | PS417_15700 | 0.87 | -1.7 | |
3,441,155 | - | +0.1 | |||
3,441,400 | - | PS417_15705 | 0.42 | +3.7 | |
3,441,400 | - | PS417_15705 | 0.42 | -0.7 | |
3,441,566 | - | PS417_15705 | 0.66 | -0.3 | |
3,441,754 | + | +2.7 | |||
3,441,754 | + | -0.5 | |||
3,441,755 | - | -0.1 | |||
3,441,760 | + | -1.5 | |||
3,441,761 | - | -0.2 | |||
3,442,194 | - | PS417_15710 | 0.54 | -0.4 | |
3,442,359 | - | PS417_15710 | 0.76 | -2.3 | |
3,442,564 | + | -0.1 | |||
3,442,611 | + | -1.0 | |||
3,442,611 | + | -0.1 | |||
3,442,611 | + | -2.6 | |||
3,442,611 | + | -1.3 | |||
3,442,612 | - | +0.5 | |||
3,442,612 | - | -0.4 | |||
3,442,734 | - | PS417_15715 | 0.12 | +1.2 | |
3,442,734 | - | PS417_15715 | 0.12 | +0.8 | |
3,442,757 | + | +1.5 | |||
3,442,758 | - | PS417_15715 | 0.14 | -0.0 | |
3,442,758 | - | PS417_15715 | 0.14 | -0.2 | |
3,443,024 | + | PS417_15715 | 0.31 | +0.3 | |
3,443,264 | + | PS417_15715 | 0.47 | -0.5 |
Or see this region's nucleotide sequence