Strain Fitness in Pseudomonas simiae WCS417 around PS417_00155

Experiment: Carbon source L-Ornithine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00145 and PS417_00150 are separated by 31 nucleotidesPS417_00150 and PS417_00155 are separated by 96 nucleotidesPS417_00155 and PS417_00160 are separated by 1 nucleotidesPS417_00160 and PS417_00165 are separated by 48 nucleotides PS417_00145: PS417_00145 - LysR family transcriptional regulator, at 31,569 to 32,519 _00145 PS417_00150: PS417_00150 - 4,5-dioxygenase, at 32,551 to 32,880 _00150 PS417_00155: PS417_00155 - 2-dehydro-3-deoxygalactonokinase, at 32,977 to 33,936 _00155 PS417_00160: PS417_00160 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 33,938 to 34,558 _00160 PS417_00165: PS417_00165 - galactonate dehydratase, at 34,607 to 35,755 _00165 Position (kb) 32 33 34Strain fitness (log2 ratio) -1 0 1 2at 32.256 kb on + strand, within PS417_00145at 32.256 kb on + strand, within PS417_00145at 32.256 kb on + strand, within PS417_00145at 32.256 kb on + strand, within PS417_00145at 32.256 kb on + strand, within PS417_00145at 32.257 kb on - strand, within PS417_00145at 32.257 kb on - strand, within PS417_00145at 32.391 kb on + strand, within PS417_00145at 32.391 kb on + strand, within PS417_00145at 32.391 kb on + strand, within PS417_00145at 32.392 kb on - strand, within PS417_00145at 32.518 kb on - strandat 32.518 kb on - strandat 32.559 kb on + strandat 32.559 kb on + strandat 32.559 kb on + strandat 32.559 kb on + strandat 32.560 kb on - strandat 32.581 kb on - strandat 32.581 kb on - strandat 32.584 kb on + strand, within PS417_00150at 32.584 kb on + strand, within PS417_00150at 32.585 kb on - strand, within PS417_00150at 32.585 kb on - strand, within PS417_00150at 32.728 kb on + strand, within PS417_00150at 32.728 kb on + strand, within PS417_00150at 32.728 kb on + strand, within PS417_00150at 32.729 kb on - strand, within PS417_00150at 32.729 kb on - strand, within PS417_00150at 32.828 kb on - strandat 32.828 kb on - strand, within PS417_00150at 32.878 kb on + strandat 32.913 kb on - strandat 32.934 kb on + strandat 32.934 kb on + strandat 32.935 kb on - strandat 32.940 kb on + strandat 32.942 kb on + strandat 33.028 kb on + strandat 33.028 kb on + strandat 33.029 kb on - strandat 33.030 kb on + strandat 33.297 kb on + strand, within PS417_00155at 33.298 kb on - strand, within PS417_00155at 33.483 kb on + strand, within PS417_00155at 33.499 kb on - strand, within PS417_00155at 33.713 kb on - strand, within PS417_00155at 34.080 kb on - strandat 34.426 kb on + strand, within PS417_00160at 34.427 kb on - strand, within PS417_00160at 34.427 kb on - strand, within PS417_00160at 34.427 kb on - strand, within PS417_00160at 34.492 kb on + strand, within PS417_00160at 34.529 kb on + strandat 34.530 kb on - strandat 34.530 kb on - strandat 34.591 kb on - strandat 34.591 kb on - strandat 34.591 kb on - strandat 34.592 kb on + strandat 34.602 kb on - strandat 34.758 kb on - strand, within PS417_00165

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM
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32,256 + PS417_00145 0.72 -0.8
32,256 + PS417_00145 0.72 -1.4
32,256 + PS417_00145 0.72 -0.0
32,256 + PS417_00145 0.72 -1.3
32,256 + PS417_00145 0.72 -1.3
32,257 - PS417_00145 0.72 +0.2
32,257 - PS417_00145 0.72 +0.1
32,391 + PS417_00145 0.86 -1.0
32,391 + PS417_00145 0.86 +0.8
32,391 + PS417_00145 0.86 +0.3
32,392 - PS417_00145 0.87 +0.0
32,518 - -0.8
32,518 - -0.3
32,559 + +0.8
32,559 + +0.5
32,559 + +0.0
32,559 + -0.4
32,560 - +1.4
32,581 - +1.2
32,581 - -0.3
32,584 + PS417_00150 0.10 +0.3
32,584 + PS417_00150 0.10 -0.6
32,585 - PS417_00150 0.10 -0.4
32,585 - PS417_00150 0.10 +0.0
32,728 + PS417_00150 0.54 +1.8
32,728 + PS417_00150 0.54 -1.2
32,728 + PS417_00150 0.54 -0.6
32,729 - PS417_00150 0.54 -0.8
32,729 - PS417_00150 0.54 +0.1
32,828 - +1.2
32,828 - PS417_00150 0.84 +0.8
32,878 + -1.4
32,913 - -0.3
32,934 + -0.0
32,934 + +0.1
32,935 - +0.3
32,940 + -0.1
32,942 + +0.0
33,028 + -1.2
33,028 + +0.1
33,029 - -0.5
33,030 + +1.8
33,297 + PS417_00155 0.33 -0.5
33,298 - PS417_00155 0.33 -0.6
33,483 + PS417_00155 0.53 -0.1
33,499 - PS417_00155 0.54 -0.4
33,713 - PS417_00155 0.77 -0.9
34,080 - +1.1
34,426 + PS417_00160 0.79 +0.7
34,427 - PS417_00160 0.79 -0.2
34,427 - PS417_00160 0.79 -0.3
34,427 - PS417_00160 0.79 +1.2
34,492 + PS417_00160 0.89 +0.3
34,529 + +0.1
34,530 - -0.2
34,530 - +0.1
34,591 - -0.3
34,591 - -0.5
34,591 - +0.2
34,592 + +0.3
34,602 - -0.9
34,758 - PS417_00165 0.13 +0.0

Or see this region's nucleotide sequence