Strain Fitness in Pseudomonas simiae WCS417 around PS417_01270

Experiment: Carbon source L-Ornithine 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_01265 and PS417_01270 overlap by 4 nucleotidesPS417_01270 and PS417_01275 are separated by 97 nucleotides PS417_01265: PS417_01265 - CbbBc protein, at 274,601 to 276,949 _01265 PS417_01270: PS417_01270 - iron ABC transporter substrate-binding protein, at 276,946 to 277,785 _01270 PS417_01275: PS417_01275 - LysR family transcriptional regulator, at 277,883 to 278,770 _01275 Position (kb) 276 277 278Strain fitness (log2 ratio) -1 0 1at 275.946 kb on + strand, within PS417_01265at 275.947 kb on - strand, within PS417_01265at 276.433 kb on - strand, within PS417_01265at 276.433 kb on - strand, within PS417_01265at 276.438 kb on + strand, within PS417_01265at 276.439 kb on - strand, within PS417_01265at 276.472 kb on - strand, within PS417_01265at 276.576 kb on + strand, within PS417_01265at 276.606 kb on + strand, within PS417_01265at 276.897 kb on + strandat 276.897 kb on + strandat 277.283 kb on + strand, within PS417_01270at 277.367 kb on - strand, within PS417_01270at 277.709 kb on + strandat 277.710 kb on - strandat 277.794 kb on - strandat 278.266 kb on - strand, within PS417_01275at 278.318 kb on - strandat 278.335 kb on - strand, within PS417_01275at 278.448 kb on - strand, within PS417_01275at 278.448 kb on - strand, within PS417_01275at 278.548 kb on - strand, within PS417_01275

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 5 mM
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275,946 + PS417_01265 0.57 -0.7
275,947 - PS417_01265 0.57 -0.8
276,433 - PS417_01265 0.78 +0.4
276,433 - PS417_01265 0.78 -0.5
276,438 + PS417_01265 0.78 -1.0
276,439 - PS417_01265 0.78 -0.8
276,472 - PS417_01265 0.80 +0.2
276,576 + PS417_01265 0.84 -1.5
276,606 + PS417_01265 0.85 -0.4
276,897 + -1.1
276,897 + -1.6
277,283 + PS417_01270 0.40 -0.3
277,367 - PS417_01270 0.50 -0.9
277,709 + -0.8
277,710 - -0.3
277,794 - -0.2
278,266 - PS417_01275 0.43 -0.6
278,318 - +0.8
278,335 - PS417_01275 0.51 -1.0
278,448 - PS417_01275 0.64 -0.9
278,448 - PS417_01275 0.64 -1.5
278,548 - PS417_01275 0.75 +0.0

Or see this region's nucleotide sequence