Strain Fitness in Pseudomonas simiae WCS417 around PS417_02415

Experiment: Carbon source L-Ornithine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_02410 and PS417_02415 are separated by 133 nucleotidesPS417_02415 and PS417_02420 are separated by 123 nucleotidesPS417_02420 and PS417_02425 are separated by 15 nucleotides PS417_02410: PS417_02410 - histidine kinase, at 551,777 to 553,279 _02410 PS417_02415: PS417_02415 - phosphoserine phosphatase, at 553,413 to 554,627 _02415 PS417_02420: PS417_02420 - phosphatidylserine decarboxylase, at 554,751 to 555,611 _02420 PS417_02425: PS417_02425 - thiosulfate sulfurtransferase, at 555,627 to 556,442 _02425 Position (kb) 553 554 555Strain fitness (log2 ratio) -3 -2 -1 0 1at 553.320 kb on - strandat 553.595 kb on - strand, within PS417_02415at 553.622 kb on + strand, within PS417_02415at 553.622 kb on + strand, within PS417_02415at 553.623 kb on - strand, within PS417_02415at 553.766 kb on + strand, within PS417_02415at 554.316 kb on + strand, within PS417_02415at 554.317 kb on - strand, within PS417_02415at 554.707 kb on - strandat 554.759 kb on + strandat 554.760 kb on - strandat 554.760 kb on - strandat 555.622 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM
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553,320 - -0.2
553,595 - PS417_02415 0.15 -2.7
553,622 + PS417_02415 0.17 -3.1
553,622 + PS417_02415 0.17 -2.2
553,623 - PS417_02415 0.17 -1.9
553,766 + PS417_02415 0.29 -2.6
554,316 + PS417_02415 0.74 -1.9
554,317 - PS417_02415 0.74 -2.9
554,707 - -0.2
554,759 + -1.5
554,760 - -0.1
554,760 - -0.5
555,622 - -0.1

Or see this region's nucleotide sequence