Experiment: Carbon source D-Mannitol 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25725 and PS417_25730 are separated by 70 nucleotides PS417_25730 and PS417_25735 overlap by 4 nucleotides PS417_25735 and PS417_25740 are separated by 84 nucleotides
PS417_25725: PS417_25725 - anthranilate synthase component I, at 5,553,238 to 5,554,719
_25725
PS417_25730: PS417_25730 - phosphoglycolate phosphatase, at 5,554,790 to 5,555,608
_25730
PS417_25735: PS417_25735 - ribulose-phosphate 3-epimerase, at 5,555,605 to 5,556,279
_25735
PS417_25740: PS417_25740 - alcohol dehydrogenase, at 5,556,364 to 5,557,512
_25740
Position (kb) 5555
5556
5557 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5554.680 kb on - strand at 5554.723 kb on - strand at 5554.744 kb on + strand at 5554.755 kb on + strand at 5554.901 kb on + strand, within PS417_25730 at 5554.902 kb on - strand, within PS417_25730 at 5554.998 kb on + strand, within PS417_25730 at 5554.999 kb on - strand, within PS417_25730 at 5555.004 kb on + strand, within PS417_25730 at 5555.015 kb on + strand, within PS417_25730 at 5555.015 kb on + strand, within PS417_25730 at 5555.015 kb on + strand, within PS417_25730 at 5555.095 kb on + strand, within PS417_25730 at 5555.181 kb on + strand, within PS417_25730 at 5556.320 kb on + strand at 5556.320 kb on + strand at 5556.321 kb on - strand at 5556.321 kb on - strand at 5556.321 kb on - strand at 5556.321 kb on - strand at 5556.322 kb on + strand at 5556.323 kb on - strand at 5556.353 kb on + strand at 5556.353 kb on + strand at 5556.353 kb on + strand at 5556.368 kb on + strand at 5556.368 kb on + strand at 5556.369 kb on - strand at 5556.660 kb on - strand at 5556.660 kb on - strand, within PS417_25740 at 5556.660 kb on - strand, within PS417_25740 at 5556.828 kb on - strand, within PS417_25740 at 5556.828 kb on - strand, within PS417_25740 at 5556.912 kb on - strand, within PS417_25740 at 5557.019 kb on + strand, within PS417_25740 at 5557.019 kb on + strand, within PS417_25740 at 5557.191 kb on - strand, within PS417_25740 at 5557.268 kb on + strand, within PS417_25740
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 5 mM remove 5,554,680 - -1.9 5,554,723 - -0.5 5,554,744 + -1.3 5,554,755 + -3.2 5,554,901 + PS417_25730 0.14 -2.1 5,554,902 - PS417_25730 0.14 +1.1 5,554,998 + PS417_25730 0.25 -0.1 5,554,999 - PS417_25730 0.26 +0.3 5,555,004 + PS417_25730 0.26 -0.1 5,555,015 + PS417_25730 0.27 +0.8 5,555,015 + PS417_25730 0.27 +1.1 5,555,015 + PS417_25730 0.27 -1.0 5,555,095 + PS417_25730 0.37 -0.8 5,555,181 + PS417_25730 0.48 +0.5 5,556,320 + -0.8 5,556,320 + -0.2 5,556,321 - +0.2 5,556,321 - -0.1 5,556,321 - -0.2 5,556,321 - -2.5 5,556,322 + -0.1 5,556,323 - +1.3 5,556,353 + +0.4 5,556,353 + -1.9 5,556,353 + +0.0 5,556,368 + +0.9 5,556,368 + -1.4 5,556,369 - +0.4 5,556,660 - +0.1 5,556,660 - PS417_25740 0.26 +0.0 5,556,660 - PS417_25740 0.26 +0.2 5,556,828 - PS417_25740 0.40 -0.2 5,556,828 - PS417_25740 0.40 -0.8 5,556,912 - PS417_25740 0.48 -0.3 5,557,019 + PS417_25740 0.57 -0.0 5,557,019 + PS417_25740 0.57 -0.7 5,557,191 - PS417_25740 0.72 +1.3 5,557,268 + PS417_25740 0.79 -1.0
Or see this region's nucleotide sequence