Strain Fitness in Pseudomonas simiae WCS417 around PS417_22105

Experiment: Carbon source D-Mannitol 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_22095 and PS417_22100 are separated by 93 nucleotidesPS417_22100 and PS417_22105 are separated by 17 nucleotidesPS417_22105 and PS417_22110 overlap by 14 nucleotides PS417_22095: PS417_22095 - class V aminotransferase, at 4,786,756 to 4,787,931 _22095 PS417_22100: PS417_22100 - keto-deoxy-phosphogluconate aldolase, at 4,788,025 to 4,788,690 _22100 PS417_22105: PS417_22105 - 6-phosphogluconolactonase, at 4,788,708 to 4,789,421 _22105 PS417_22110: PS417_22110 - glucose-6-phosphate dehydrogenase, at 4,789,408 to 4,790,874 _22110 Position (kb) 4788 4789 4790Strain fitness (log2 ratio) -1 0 1at 4787.729 kb on - strand, within PS417_22095at 4787.930 kb on - strandat 4787.930 kb on - strandat 4787.961 kb on - strandat 4788.015 kb on + strandat 4790.367 kb on - strand, within PS417_22110

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 5 mM
remove
4,787,729 - PS417_22095 0.83 -0.7
4,787,930 - +0.5
4,787,930 - -0.1
4,787,961 - -0.1
4,788,015 + -0.4
4,790,367 - PS417_22110 0.65 -1.1

Or see this region's nucleotide sequence