Experiment: Carbon source D-Mannitol 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01805 and PS417_01810 are separated by 162 nucleotides PS417_01810 and PS417_01815 overlap by 8 nucleotides PS417_01815 and PS417_01820 are separated by 16 nucleotides
PS417_01805: PS417_01805 - amino acid ABC transporter substrate-binding protein, at 403,052 to 403,849
_01805
PS417_01810: PS417_01810 - ABC transporter permease, at 404,012 to 404,971
_01810
PS417_01815: PS417_01815 - peptide ABC transporter ATP-binding protein, at 404,964 to 405,698
_01815
PS417_01820: PS417_01820 - chemotaxis protein, at 405,715 to 407,622
_01820
Position (kb) 404
405 Strain fitness (log2 ratio) -2
-1
0
1
2 at 403.025 kb on + strand at 403.025 kb on + strand at 403.026 kb on - strand at 403.026 kb on - strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.027 kb on + strand at 403.028 kb on - strand at 403.178 kb on + strand, within PS417_01805 at 403.179 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.458 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.460 kb on - strand, within PS417_01805 at 403.550 kb on + strand, within PS417_01805 at 403.550 kb on + strand, within PS417_01805 at 403.551 kb on - strand at 403.551 kb on - strand, within PS417_01805 at 403.590 kb on + strand, within PS417_01805 at 403.591 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.632 kb on - strand, within PS417_01805 at 403.638 kb on + strand, within PS417_01805 at 403.639 kb on - strand, within PS417_01805 at 403.677 kb on - strand, within PS417_01805 at 403.734 kb on - strand, within PS417_01805 at 403.790 kb on + strand at 404.087 kb on + strand at 404.087 kb on + strand at 404.088 kb on - strand at 404.088 kb on - strand at 404.091 kb on - strand at 404.091 kb on - strand at 404.112 kb on - strand, within PS417_01810 at 404.142 kb on - strand, within PS417_01810 at 404.142 kb on - strand, within PS417_01810 at 404.509 kb on + strand, within PS417_01810 at 404.510 kb on - strand, within PS417_01810 at 404.517 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.618 kb on + strand, within PS417_01810 at 404.619 kb on - strand, within PS417_01810 at 404.619 kb on - strand, within PS417_01810 at 404.773 kb on + strand, within PS417_01810 at 404.773 kb on + strand, within PS417_01810 at 404.774 kb on - strand, within PS417_01810 at 404.775 kb on + strand, within PS417_01810 at 404.776 kb on - strand, within PS417_01810 at 404.900 kb on + strand at 404.900 kb on + strand at 404.987 kb on - strand at 404.987 kb on - strand at 405.249 kb on - strand, within PS417_01815 at 405.249 kb on - strand, within PS417_01815 at 405.697 kb on - strand at 405.838 kb on + strand at 405.838 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 5 mM remove 403,025 + +0.9 403,025 + +1.4 403,026 - -1.0 403,026 - -0.5 403,027 + -0.3 403,027 + +0.3 403,027 + +1.0 403,027 + +0.1 403,028 - -0.3 403,178 + PS417_01805 0.16 +0.1 403,179 - PS417_01805 0.16 +0.4 403,458 - PS417_01805 0.51 +1.4 403,458 - PS417_01805 0.51 +1.3 403,458 - PS417_01805 0.51 +0.4 403,458 - PS417_01805 0.51 +0.4 403,458 - PS417_01805 0.51 -0.4 403,458 - PS417_01805 0.51 -1.2 403,460 - PS417_01805 0.51 -0.8 403,460 - PS417_01805 0.51 +0.1 403,460 - PS417_01805 0.51 -0.0 403,460 - PS417_01805 0.51 -0.7 403,550 + PS417_01805 0.62 -0.1 403,550 + PS417_01805 0.62 +0.8 403,551 - -0.0 403,551 - PS417_01805 0.63 -0.5 403,590 + PS417_01805 0.67 +0.1 403,591 - PS417_01805 0.68 -0.9 403,632 - PS417_01805 0.73 -2.5 403,632 - PS417_01805 0.73 +0.1 403,632 - PS417_01805 0.73 +1.3 403,638 + PS417_01805 0.73 +0.3 403,639 - PS417_01805 0.74 -0.0 403,677 - PS417_01805 0.78 +0.1 403,734 - PS417_01805 0.85 -2.1 403,790 + +0.8 404,087 + -0.3 404,087 + -0.0 404,088 - +1.4 404,088 - -0.4 404,091 - +0.5 404,091 - +0.3 404,112 - PS417_01810 0.10 -0.2 404,142 - PS417_01810 0.14 +0.4 404,142 - PS417_01810 0.14 +0.2 404,509 + PS417_01810 0.52 -0.3 404,510 - PS417_01810 0.52 +2.1 404,517 + PS417_01810 0.53 -1.3 404,618 + PS417_01810 0.63 +1.1 404,618 + PS417_01810 0.63 +0.1 404,618 + PS417_01810 0.63 +0.8 404,618 + PS417_01810 0.63 +1.5 404,619 - PS417_01810 0.63 -0.5 404,619 - PS417_01810 0.63 +1.1 404,773 + PS417_01810 0.79 -0.7 404,773 + PS417_01810 0.79 +0.7 404,774 - PS417_01810 0.79 +1.4 404,775 + PS417_01810 0.79 +0.2 404,776 - PS417_01810 0.80 +0.9 404,900 + -0.4 404,900 + -0.5 404,987 - +0.1 404,987 - +0.0 405,249 - PS417_01815 0.39 +1.7 405,249 - PS417_01815 0.39 +0.2 405,697 - -0.5 405,838 + -0.9 405,838 + -0.1
Or see this region's nucleotide sequence