Experiment: Carbon source D-Mannitol 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17720 and PS417_17725 are separated by 28 nucleotides PS417_17725 and PS417_17730 overlap by 35 nucleotides PS417_17730 and PS417_17735 are separated by 63 nucleotides
PS417_17720: PS417_17720 - xylitol 2-dehydrogenase (EC 1.1.1.9) (from data) , at 3,867,597 to 3,868,676
_17720
PS417_17725: PS417_17725 - ribose ABC transporter permease, at 3,868,705 to 3,869,697
_17725
PS417_17730: PS417_17730 - ribonucleotide-diphosphate reductase subunit alpha, at 3,869,663 to 3,871,171
_17730
PS417_17735: PS417_17735 - LacI family transcriptional regulator, at 3,871,235 to 3,872,158
_17735
Position (kb)
3869
3870
3871
3872 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3868.706 kb on + strand at 3868.707 kb on - strand at 3868.761 kb on + strand at 3868.775 kb on + strand at 3868.963 kb on + strand, within PS417_17725 at 3869.003 kb on + strand, within PS417_17725 at 3869.004 kb on - strand, within PS417_17725 at 3869.075 kb on + strand, within PS417_17725 at 3869.075 kb on + strand, within PS417_17725 at 3869.114 kb on + strand, within PS417_17725 at 3869.115 kb on - strand, within PS417_17725 at 3869.126 kb on + strand, within PS417_17725 at 3869.126 kb on + strand, within PS417_17725 at 3869.127 kb on - strand, within PS417_17725 at 3869.231 kb on + strand, within PS417_17725 at 3869.300 kb on + strand, within PS417_17725 at 3869.365 kb on + strand, within PS417_17725 at 3869.673 kb on + strand at 3870.090 kb on + strand at 3870.091 kb on - strand, within PS417_17730 at 3870.091 kb on - strand, within PS417_17730 at 3871.732 kb on - strand, within PS417_17735 at 3871.732 kb on - strand, within PS417_17735 at 3872.029 kb on - strand, within PS417_17735
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 5 mM remove 3,868,706 + +1.1 3,868,707 - +0.4 3,868,761 + +2.0 3,868,775 + -0.1 3,868,963 + PS417_17725 0.26 +0.4 3,869,003 + PS417_17725 0.30 -0.6 3,869,004 - PS417_17725 0.30 +0.2 3,869,075 + PS417_17725 0.37 -0.7 3,869,075 + PS417_17725 0.37 +1.0 3,869,114 + PS417_17725 0.41 -1.1 3,869,115 - PS417_17725 0.41 +0.4 3,869,126 + PS417_17725 0.42 -0.0 3,869,126 + PS417_17725 0.42 +0.5 3,869,127 - PS417_17725 0.42 +0.5 3,869,231 + PS417_17725 0.53 +0.4 3,869,300 + PS417_17725 0.60 -0.3 3,869,365 + PS417_17725 0.66 -1.9 3,869,673 + +0.7 3,870,090 + -1.0 3,870,091 - PS417_17730 0.28 +2.3 3,870,091 - PS417_17730 0.28 +0.1 3,871,732 - PS417_17735 0.54 +0.2 3,871,732 - PS417_17735 0.54 +0.5 3,872,029 - PS417_17735 0.86 +0.1
Or see this region's nucleotide sequence