Strain Fitness in Pseudomonas simiae WCS417 around PS417_05790

Experiment: Carbon source D-Mannitol 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05775 and PS417_05780 overlap by 1 nucleotidesPS417_05780 and PS417_05785 overlap by 8 nucleotidesPS417_05785 and PS417_05790 are separated by 9 nucleotidesPS417_05790 and PS417_05795 are separated by 6 nucleotidesPS417_05795 and PS417_05800 overlap by 4 nucleotidesPS417_05800 and PS417_05805 overlap by 8 nucleotides PS417_05775: PS417_05775 - tail tape measure protein, at 1,289,845 to 1,291,305 _05775 PS417_05780: PS417_05780 - hypothetical protein, at 1,291,305 to 1,291,688 _05780 PS417_05785: PS417_05785 - tail protein, at 1,291,681 to 1,291,893 _05785 PS417_05790: PS417_05790 - hypothetical protein, at 1,291,903 to 1,292,910 _05790 PS417_05795: PS417_05795 - lysozyme, at 1,292,917 to 1,293,474 _05795 PS417_05800: PS417_05800 - hypothetical protein, at 1,293,471 to 1,293,686 _05800 PS417_05805: PS417_05805 - hypothetical protein, at 1,293,679 to 1,293,885 _05805 Position (kb) 1291 1292 1293Strain fitness (log2 ratio) -1 0 1at 1291.186 kb on + strandat 1291.334 kb on + strandat 1291.334 kb on + strandat 1291.363 kb on - strand, within PS417_05780at 1291.564 kb on + strand, within PS417_05780at 1291.687 kb on - strandat 1291.687 kb on - strandat 1291.698 kb on + strandat 1291.698 kb on + strandat 1291.698 kb on + strandat 1291.739 kb on + strand, within PS417_05785at 1291.739 kb on + strand, within PS417_05785at 1291.891 kb on + strandat 1291.918 kb on - strandat 1291.937 kb on - strandat 1292.115 kb on + strand, within PS417_05790at 1292.422 kb on + strand, within PS417_05790at 1292.422 kb on + strand, within PS417_05790at 1292.422 kb on + strand, within PS417_05790at 1292.563 kb on + strand, within PS417_05790at 1292.867 kb on - strandat 1293.112 kb on + strand, within PS417_05795at 1293.112 kb on + strand, within PS417_05795at 1293.113 kb on - strand, within PS417_05795at 1293.124 kb on + strand, within PS417_05795at 1293.124 kb on + strand, within PS417_05795at 1293.124 kb on + strand, within PS417_05795at 1293.125 kb on - strand, within PS417_05795at 1293.125 kb on - strand, within PS417_05795at 1293.125 kb on - strand, within PS417_05795at 1293.232 kb on + strand, within PS417_05795at 1293.232 kb on + strand, within PS417_05795at 1293.233 kb on - strandat 1293.396 kb on + strand, within PS417_05795at 1293.397 kb on - strand, within PS417_05795at 1293.473 kb on - strandat 1293.496 kb on + strand, within PS417_05800at 1293.496 kb on + strand, within PS417_05800at 1293.496 kb on + strand, within PS417_05800at 1293.496 kb on + strand, within PS417_05800at 1293.496 kb on + strand, within PS417_05800at 1293.497 kb on - strand, within PS417_05800at 1293.526 kb on + strand, within PS417_05800at 1293.689 kb on + strandat 1293.689 kb on + strandat 1293.690 kb on - strandat 1293.699 kb on - strandat 1293.851 kb on + strand, within PS417_05805at 1293.909 kb on + strandat 1293.909 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 5 mM
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1,291,186 + +1.0
1,291,334 + +0.2
1,291,334 + -0.3
1,291,363 - PS417_05780 0.15 +0.1
1,291,564 + PS417_05780 0.67 +0.6
1,291,687 - +0.4
1,291,687 - -0.6
1,291,698 + +0.3
1,291,698 + +0.4
1,291,698 + +0.1
1,291,739 + PS417_05785 0.27 -0.8
1,291,739 + PS417_05785 0.27 +0.5
1,291,891 + +1.1
1,291,918 - -0.5
1,291,937 - -0.4
1,292,115 + PS417_05790 0.21 +0.3
1,292,422 + PS417_05790 0.51 -0.1
1,292,422 + PS417_05790 0.51 +0.1
1,292,422 + PS417_05790 0.51 -0.3
1,292,563 + PS417_05790 0.65 +1.2
1,292,867 - -1.3
1,293,112 + PS417_05795 0.35 -1.2
1,293,112 + PS417_05795 0.35 -0.0
1,293,113 - PS417_05795 0.35 -0.3
1,293,124 + PS417_05795 0.37 -0.5
1,293,124 + PS417_05795 0.37 +0.9
1,293,124 + PS417_05795 0.37 +0.2
1,293,125 - PS417_05795 0.37 -0.5
1,293,125 - PS417_05795 0.37 -0.4
1,293,125 - PS417_05795 0.37 -0.4
1,293,232 + PS417_05795 0.56 -0.4
1,293,232 + PS417_05795 0.56 +0.4
1,293,233 - -0.5
1,293,396 + PS417_05795 0.86 -1.4
1,293,397 - PS417_05795 0.86 -0.1
1,293,473 - +0.4
1,293,496 + PS417_05800 0.12 +0.1
1,293,496 + PS417_05800 0.12 -0.8
1,293,496 + PS417_05800 0.12 -0.5
1,293,496 + PS417_05800 0.12 +1.3
1,293,496 + PS417_05800 0.12 -0.1
1,293,497 - PS417_05800 0.12 -0.0
1,293,526 + PS417_05800 0.25 -0.3
1,293,689 + +0.7
1,293,689 + -0.3
1,293,690 - -0.9
1,293,699 - -0.6
1,293,851 + PS417_05805 0.83 -0.0
1,293,909 + -0.1
1,293,909 + -0.1

Or see this region's nucleotide sequence