Strain Fitness in Pseudomonas simiae WCS417 around PS417_28265

Experiment: Carbon source D-Mannitol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28255 and PS417_28260 are separated by 293 nucleotidesPS417_28260 and PS417_28265 are separated by 125 nucleotidesPS417_28265 and PS417_28270 are separated by 117 nucleotidesPS417_28270 and PS417_28275 overlap by 7 nucleotides PS417_28255: PS417_28255 - potassium transporter, at 6,102,500 to 6,104,263 _28255 PS417_28260: PS417_28260 - VdlD, at 6,104,557 to 6,105,033 _28260 PS417_28265: PS417_28265 - pyridoxamine kinase, at 6,105,159 to 6,106,031 _28265 PS417_28270: PS417_28270 - hypothetical protein, at 6,106,149 to 6,106,544 _28270 PS417_28275: PS417_28275 - cobalamin biosynthesis protein CobW, at 6,106,538 to 6,107,500 _28275 Position (kb) 6105 6106 6107Strain fitness (log2 ratio) -1 0 1 2at 6104.161 kb on - strandat 6104.161 kb on - strandat 6104.161 kb on - strandat 6104.161 kb on - strandat 6104.161 kb on - strandat 6104.161 kb on - strandat 6104.284 kb on + strandat 6104.359 kb on + strandat 6104.392 kb on - strandat 6104.425 kb on + strandat 6104.425 kb on + strandat 6104.425 kb on + strandat 6104.425 kb on + strandat 6104.426 kb on - strandat 6104.427 kb on + strandat 6104.428 kb on - strandat 6104.428 kb on - strandat 6104.428 kb on - strandat 6104.538 kb on + strandat 6104.539 kb on - strandat 6104.539 kb on - strandat 6104.556 kb on + strandat 6104.625 kb on + strand, within PS417_28260at 6104.626 kb on - strand, within PS417_28260at 6104.653 kb on + strand, within PS417_28260at 6104.653 kb on + strand, within PS417_28260at 6104.671 kb on + strand, within PS417_28260at 6104.671 kb on + strand, within PS417_28260at 6104.701 kb on + strand, within PS417_28260at 6104.701 kb on + strand, within PS417_28260at 6104.788 kb on + strand, within PS417_28260at 6104.789 kb on - strand, within PS417_28260at 6104.789 kb on - strand, within PS417_28260at 6104.789 kb on - strand, within PS417_28260at 6104.862 kb on + strand, within PS417_28260at 6104.907 kb on + strand, within PS417_28260at 6105.160 kb on + strandat 6105.160 kb on + strandat 6105.160 kb on + strandat 6105.160 kb on + strandat 6105.162 kb on + strandat 6105.222 kb on + strandat 6105.222 kb on + strandat 6105.701 kb on - strand, within PS417_28265at 6105.701 kb on - strand, within PS417_28265at 6106.075 kb on - strandat 6106.082 kb on + strandat 6106.313 kb on - strand, within PS417_28270at 6106.313 kb on - strand, within PS417_28270at 6106.360 kb on - strand, within PS417_28270at 6106.501 kb on + strand, within PS417_28270at 6106.944 kb on - strand, within PS417_28275at 6106.966 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 10 mM
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6,104,161 - +0.7
6,104,161 - +0.1
6,104,161 - +0.1
6,104,161 - +0.1
6,104,161 - -0.4
6,104,161 - +0.9
6,104,284 + -0.1
6,104,359 + -0.7
6,104,392 - +1.2
6,104,425 + -0.1
6,104,425 + +0.9
6,104,425 + -0.8
6,104,425 + +0.8
6,104,426 - -0.4
6,104,427 + -0.3
6,104,428 - +0.2
6,104,428 - +0.2
6,104,428 - +0.4
6,104,538 + -0.6
6,104,539 - +0.2
6,104,539 - +0.3
6,104,556 + -0.3
6,104,625 + PS417_28260 0.14 +0.5
6,104,626 - PS417_28260 0.14 -0.4
6,104,653 + PS417_28260 0.20 -1.0
6,104,653 + PS417_28260 0.20 +0.0
6,104,671 + PS417_28260 0.24 +0.5
6,104,671 + PS417_28260 0.24 -0.4
6,104,701 + PS417_28260 0.30 -0.3
6,104,701 + PS417_28260 0.30 +0.4
6,104,788 + PS417_28260 0.48 +0.6
6,104,789 - PS417_28260 0.49 +0.8
6,104,789 - PS417_28260 0.49 -1.0
6,104,789 - PS417_28260 0.49 +0.0
6,104,862 + PS417_28260 0.64 -0.1
6,104,907 + PS417_28260 0.73 -0.4
6,105,160 + +0.5
6,105,160 + -1.2
6,105,160 + -0.0
6,105,160 + -0.5
6,105,162 + -0.9
6,105,222 + +0.3
6,105,222 + -0.0
6,105,701 - PS417_28265 0.62 +1.1
6,105,701 - PS417_28265 0.62 -0.1
6,106,075 - +0.2
6,106,082 + +1.2
6,106,313 - PS417_28270 0.41 +0.0
6,106,313 - PS417_28270 0.41 +0.2
6,106,360 - PS417_28270 0.53 -0.1
6,106,501 + PS417_28270 0.89 -0.7
6,106,944 - PS417_28275 0.42 -0.3
6,106,966 - +2.4

Or see this region's nucleotide sequence