Strain Fitness in Pseudomonas simiae WCS417 around PS417_21625

Experiment: Carbon source D-Mannitol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_21615 and PS417_21620 are separated by 10 nucleotidesPS417_21620 and PS417_21625 are separated by 386 nucleotidesPS417_21625 and PS417_21630 are separated by 102 nucleotides PS417_21615: PS417_21615 - hypothetical protein, at 4,691,185 to 4,691,412 _21615 PS417_21620: PS417_21620 - hypothetical protein, at 4,691,423 to 4,691,602 _21620 PS417_21625: PS417_21625 - DNA-binding protein, at 4,691,989 to 4,692,315 _21625 PS417_21630: PS417_21630 - magnesium transporter, at 4,692,418 to 4,693,860 _21630 Position (kb) 4691 4692 4693Strain fitness (log2 ratio) -1 0 1at 4691.109 kb on + strandat 4691.110 kb on - strandat 4691.358 kb on - strand, within PS417_21615at 4691.625 kb on + strandat 4691.625 kb on + strandat 4691.625 kb on + strandat 4691.625 kb on + strandat 4691.626 kb on - strandat 4691.626 kb on - strandat 4691.626 kb on - strandat 4691.626 kb on - strandat 4691.626 kb on - strandat 4691.696 kb on + strandat 4691.699 kb on - strandat 4691.699 kb on - strandat 4691.813 kb on + strandat 4691.834 kb on + strandat 4691.835 kb on - strandat 4691.930 kb on + strandat 4691.930 kb on + strandat 4691.931 kb on - strandat 4691.986 kb on + strandat 4691.986 kb on + strandat 4691.989 kb on - strandat 4692.045 kb on - strand, within PS417_21625at 4692.623 kb on + strand, within PS417_21630at 4692.632 kb on + strand, within PS417_21630at 4692.948 kb on + strand, within PS417_21630at 4693.236 kb on - strand, within PS417_21630at 4693.293 kb on - strand, within PS417_21630

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 10 mM
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4,691,109 + -0.2
4,691,110 - -0.4
4,691,358 - PS417_21615 0.76 -1.0
4,691,625 + +0.1
4,691,625 + -1.0
4,691,625 + +0.9
4,691,625 + -1.5
4,691,626 - -0.1
4,691,626 - -0.2
4,691,626 - +0.7
4,691,626 - +0.2
4,691,626 - -0.5
4,691,696 + -0.6
4,691,699 - +0.0
4,691,699 - +0.3
4,691,813 + -0.7
4,691,834 + +0.2
4,691,835 - -0.1
4,691,930 + -0.0
4,691,930 + -0.2
4,691,931 - +1.0
4,691,986 + -1.6
4,691,986 + -0.6
4,691,989 - -1.6
4,692,045 - PS417_21625 0.17 +0.7
4,692,623 + PS417_21630 0.14 -0.6
4,692,632 + PS417_21630 0.15 +0.4
4,692,948 + PS417_21630 0.37 +0.4
4,693,236 - PS417_21630 0.57 -1.4
4,693,293 - PS417_21630 0.61 +1.4

Or see this region's nucleotide sequence