Strain Fitness in Pseudomonas simiae WCS417 around PS417_16105

Experiment: Carbon source D-Mannitol 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_16100 and PS417_16105 are separated by 422 nucleotidesPS417_16105 and PS417_16110 are separated by 206 nucleotidesPS417_16110 and PS417_16115 are separated by 58 nucleotides PS417_16100: PS417_16100 - antibiotic biosynthesis monooxygenase, at 3,529,963 to 3,530,553 _16100 PS417_16105: PS417_16105 - LysR family transcriptional regulator, at 3,530,976 to 3,531,884 _16105 PS417_16110: PS417_16110 - AraC family transcriptional regulator, at 3,532,091 to 3,532,489 _16110 PS417_16115: PS417_16115 - transcriptional regulator, at 3,532,548 to 3,535,310 _16115 Position (kb) 3530 3531 3532Strain fitness (log2 ratio) -2 -1 0 1 2at 3530.084 kb on + strand, within PS417_16100at 3530.359 kb on + strand, within PS417_16100at 3530.359 kb on + strand, within PS417_16100at 3530.402 kb on - strand, within PS417_16100at 3530.402 kb on - strand, within PS417_16100at 3530.402 kb on - strand, within PS417_16100at 3530.469 kb on - strand, within PS417_16100at 3530.627 kb on + strandat 3530.627 kb on + strandat 3530.628 kb on - strandat 3530.628 kb on - strandat 3530.700 kb on - strandat 3530.758 kb on + strandat 3530.758 kb on + strandat 3530.758 kb on + strandat 3530.759 kb on - strandat 3530.993 kb on + strandat 3531.314 kb on - strand, within PS417_16105at 3531.314 kb on - strandat 3531.596 kb on + strand, within PS417_16105at 3531.919 kb on + strandat 3531.919 kb on + strandat 3531.920 kb on - strandat 3532.040 kb on + strandat 3532.109 kb on + strandat 3532.110 kb on - strandat 3532.110 kb on - strandat 3532.406 kb on - strand, within PS417_16110at 3532.459 kb on - strandat 3532.459 kb on - strandat 3532.466 kb on - strandat 3532.511 kb on - strandat 3532.770 kb on - strandat 3532.821 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 10 mM
remove
3,530,084 + PS417_16100 0.20 +0.5
3,530,359 + PS417_16100 0.67 -2.0
3,530,359 + PS417_16100 0.67 +0.7
3,530,402 - PS417_16100 0.74 +1.0
3,530,402 - PS417_16100 0.74 +2.1
3,530,402 - PS417_16100 0.74 -0.0
3,530,469 - PS417_16100 0.86 +0.5
3,530,627 + -0.3
3,530,627 + +0.6
3,530,628 - -0.0
3,530,628 - -0.3
3,530,700 - +0.3
3,530,758 + +0.4
3,530,758 + -0.1
3,530,758 + +0.8
3,530,759 - -1.0
3,530,993 + +0.1
3,531,314 - PS417_16105 0.37 -0.2
3,531,314 - -1.7
3,531,596 + PS417_16105 0.68 +1.1
3,531,919 + -0.0
3,531,919 + +1.0
3,531,920 - -0.3
3,532,040 + -0.2
3,532,109 + -0.1
3,532,110 - -1.0
3,532,110 - -1.5
3,532,406 - PS417_16110 0.79 +0.9
3,532,459 - -0.0
3,532,459 - +0.1
3,532,466 - +0.9
3,532,511 - +2.1
3,532,770 - +0.3
3,532,821 - -0.9

Or see this region's nucleotide sequence