Strain Fitness in Pseudomonas simiae WCS417 around PS417_15065

Experiment: Carbon source D-Mannitol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_15055 and PS417_15060 are separated by 172 nucleotidesPS417_15060 and PS417_15065 are separated by 17 nucleotidesPS417_15065 and PS417_15070 are separated by 120 nucleotidesPS417_15070 and PS417_15075 are separated by 54 nucleotides PS417_15055: PS417_15055 - C4-dicarboxylate ABC transporter, at 3,289,749 to 3,291,059 _15055 PS417_15060: PS417_15060 - GntR family transcriptional regulator, at 3,291,232 to 3,291,933 _15060 PS417_15065: PS417_15065 - GntR family transcriptional regulator, at 3,291,951 to 3,292,643 _15065 PS417_15070: PS417_15070 - hypothetical protein, at 3,292,764 to 3,293,384 _15070 PS417_15075: PS417_15075 - NAD-glutamate dehydrogenase, at 3,293,439 to 3,298,307 _15075 Position (kb) 3291 3292 3293Strain fitness (log2 ratio) -2 -1 0 1at 3291.009 kb on + strandat 3291.010 kb on - strandat 3291.973 kb on - strandat 3292.035 kb on + strandat 3292.350 kb on + strand, within PS417_15065at 3292.512 kb on + strand, within PS417_15065at 3292.668 kb on - strandat 3292.757 kb on + strandat 3292.758 kb on - strandat 3292.821 kb on + strandat 3292.821 kb on + strandat 3292.821 kb on + strandat 3292.821 kb on + strandat 3292.821 kb on + strandat 3292.821 kb on + strandat 3292.822 kb on - strandat 3292.825 kb on + strandat 3292.825 kb on + strandat 3292.857 kb on + strand, within PS417_15070at 3292.858 kb on - strand, within PS417_15070at 3292.858 kb on - strand, within PS417_15070at 3292.858 kb on - strand, within PS417_15070at 3292.858 kb on - strand, within PS417_15070at 3293.185 kb on + strand, within PS417_15070at 3293.227 kb on - strand, within PS417_15070at 3293.261 kb on - strand, within PS417_15070at 3293.318 kb on - strand, within PS417_15070at 3293.318 kb on - strand, within PS417_15070at 3293.318 kb on - strand, within PS417_15070at 3293.318 kb on - strand, within PS417_15070at 3293.413 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 10 mM
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3,291,009 + -0.1
3,291,010 - +0.4
3,291,973 - +1.1
3,292,035 + +0.1
3,292,350 + PS417_15065 0.58 +0.6
3,292,512 + PS417_15065 0.81 +0.5
3,292,668 - -0.6
3,292,757 + +0.6
3,292,758 - +0.2
3,292,821 + -0.2
3,292,821 + +0.1
3,292,821 + +0.0
3,292,821 + +0.1
3,292,821 + -0.3
3,292,821 + +0.9
3,292,822 - +0.5
3,292,825 + +0.6
3,292,825 + +0.5
3,292,857 + PS417_15070 0.15 +1.1
3,292,858 - PS417_15070 0.15 +0.1
3,292,858 - PS417_15070 0.15 +0.1
3,292,858 - PS417_15070 0.15 -2.2
3,292,858 - PS417_15070 0.15 +0.2
3,293,185 + PS417_15070 0.68 -0.6
3,293,227 - PS417_15070 0.75 -0.0
3,293,261 - PS417_15070 0.80 +0.1
3,293,318 - PS417_15070 0.89 +0.0
3,293,318 - PS417_15070 0.89 +1.5
3,293,318 - PS417_15070 0.89 -0.4
3,293,318 - PS417_15070 0.89 +0.1
3,293,413 - -1.2

Or see this region's nucleotide sequence