Strain Fitness in Pseudomonas simiae WCS417 around PS417_13255

Experiment: Carbon source D-Mannitol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13250 and PS417_13255 overlap by 4 nucleotidesPS417_13255 and PS417_13260 overlap by 4 nucleotides PS417_13250: PS417_13250 - ABC transporter, at 2,897,839 to 2,899,584 _13250 PS417_13255: PS417_13255 - ABC transporter, at 2,899,581 to 2,901,314 _13255 PS417_13260: PS417_13260 - pyochelin synthetase, at 2,901,311 to 2,906,767 _13260 Position (kb) 2899 2900 2901 2902Strain fitness (log2 ratio) -2 -1 0 1at 2898.971 kb on - strandat 2898.971 kb on - strand, within PS417_13250at 2898.971 kb on - strand, within PS417_13250at 2899.370 kb on + strand, within PS417_13250at 2899.371 kb on - strand, within PS417_13250at 2899.561 kb on + strandat 2899.562 kb on - strandat 2899.562 kb on - strandat 2899.562 kb on - strandat 2900.801 kb on - strand, within PS417_13255at 2900.801 kb on - strand, within PS417_13255at 2901.508 kb on - strandat 2901.639 kb on + strandat 2901.871 kb on - strand, within PS417_13260at 2902.095 kb on + strand, within PS417_13260

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 10 mM
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2,898,971 - -1.3
2,898,971 - PS417_13250 0.65 -0.1
2,898,971 - PS417_13250 0.65 +0.4
2,899,370 + PS417_13250 0.88 +0.3
2,899,371 - PS417_13250 0.88 -1.5
2,899,561 + -0.2
2,899,562 - +1.4
2,899,562 - +0.3
2,899,562 - -0.6
2,900,801 - PS417_13255 0.70 +1.5
2,900,801 - PS417_13255 0.70 +0.2
2,901,508 - +0.3
2,901,639 + +1.1
2,901,871 - PS417_13260 0.10 -0.6
2,902,095 + PS417_13260 0.14 -1.9

Or see this region's nucleotide sequence