Strain Fitness in Pseudomonas simiae WCS417 around PS417_11800

Experiment: Carbon source D-Mannitol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_11795 and PS417_11800 are separated by 27 nucleotidesPS417_11800 and PS417_11805 are separated by 113 nucleotides PS417_11795: PS417_11795 - FAD-dependent oxidoreductase, at 2,566,989 to 2,568,281 _11795 PS417_11800: PS417_11800 - LysR family transcriptional regulator, at 2,568,309 to 2,569,202 _11800 PS417_11805: PS417_11805 - D-threo-aldose 1-dehydrogenase, at 2,569,316 to 2,570,320 _11805 Position (kb) 2568 2569 2570Strain fitness (log2 ratio) -1 0 1 2at 2567.479 kb on + strand, within PS417_11795at 2567.479 kb on + strand, within PS417_11795at 2567.479 kb on + strand, within PS417_11795at 2567.505 kb on + strand, within PS417_11795at 2567.763 kb on + strand, within PS417_11795at 2567.764 kb on - strand, within PS417_11795at 2567.857 kb on - strand, within PS417_11795at 2567.940 kb on + strand, within PS417_11795at 2567.941 kb on - strand, within PS417_11795at 2567.941 kb on - strand, within PS417_11795at 2568.063 kb on + strand, within PS417_11795at 2568.147 kb on - strand, within PS417_11795at 2568.280 kb on - strandat 2568.349 kb on - strandat 2568.823 kb on + strandat 2568.823 kb on + strand, within PS417_11800at 2568.823 kb on + strand, within PS417_11800at 2568.824 kb on - strand, within PS417_11800at 2568.824 kb on - strand, within PS417_11800at 2568.824 kb on - strand, within PS417_11800at 2568.833 kb on + strand, within PS417_11800at 2568.910 kb on + strand, within PS417_11800at 2568.910 kb on + strand, within PS417_11800at 2568.911 kb on - strandat 2569.265 kb on + strandat 2569.266 kb on - strandat 2569.312 kb on + strandat 2569.313 kb on - strandat 2569.572 kb on + strand, within PS417_11805at 2569.572 kb on + strand, within PS417_11805at 2569.573 kb on - strand, within PS417_11805at 2569.772 kb on + strand, within PS417_11805at 2569.772 kb on + strand, within PS417_11805at 2569.857 kb on + strand, within PS417_11805at 2569.857 kb on + strand, within PS417_11805at 2569.935 kb on - strand, within PS417_11805

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source D-Mannitol 10 mM
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2,567,479 + PS417_11795 0.38 -0.4
2,567,479 + PS417_11795 0.38 +1.1
2,567,479 + PS417_11795 0.38 -0.4
2,567,505 + PS417_11795 0.40 -1.0
2,567,763 + PS417_11795 0.60 -0.7
2,567,764 - PS417_11795 0.60 +0.1
2,567,857 - PS417_11795 0.67 -0.9
2,567,940 + PS417_11795 0.74 +0.0
2,567,941 - PS417_11795 0.74 -0.2
2,567,941 - PS417_11795 0.74 +0.0
2,568,063 + PS417_11795 0.83 -0.2
2,568,147 - PS417_11795 0.90 -0.4
2,568,280 - -1.0
2,568,349 - +0.2
2,568,823 + +0.6
2,568,823 + PS417_11800 0.57 -0.0
2,568,823 + PS417_11800 0.57 -0.3
2,568,824 - PS417_11800 0.58 +0.1
2,568,824 - PS417_11800 0.58 +1.4
2,568,824 - PS417_11800 0.58 +1.0
2,568,833 + PS417_11800 0.59 +0.7
2,568,910 + PS417_11800 0.67 +1.4
2,568,910 + PS417_11800 0.67 +0.4
2,568,911 - +1.6
2,569,265 + +0.4
2,569,266 - +0.4
2,569,312 + +0.1
2,569,313 - +0.4
2,569,572 + PS417_11805 0.25 +2.4
2,569,572 + PS417_11805 0.25 -0.3
2,569,573 - PS417_11805 0.26 +0.2
2,569,772 + PS417_11805 0.45 -0.3
2,569,772 + PS417_11805 0.45 -0.7
2,569,857 + PS417_11805 0.54 +1.5
2,569,857 + PS417_11805 0.54 -0.3
2,569,935 - PS417_11805 0.62 +0.0

Or see this region's nucleotide sequence