Experiment: AgroPhage_H10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0583 and Atu0584 are separated by 142 nucleotides Atu0584 and Atu0585 are separated by 29 nucleotides Atu0585 and Atu8132 overlap by 1 nucleotides Atu8132 and Atu0587 are separated by 183 nucleotides
Atu0583: Atu0583 - hypothetical protein, at 567,437 to 567,856
Atu0583
Atu0584: Atu0584 - hypothetical protein, at 567,999 to 568,526
Atu0584
Atu0585: Atu0585 - hypothetical protein, at 568,556 to 568,924
Atu0585
Atu8132: Atu8132 - hypothetical protein, at 568,924 to 569,457
Atu8132
Atu0587: Atu0587 - teichoic acid biosynthesis protein, at 569,641 to 570,315
Atu0587
Position (kb) 568
569 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 567.585 kb on + strand, within Atu0583 at 567.588 kb on + strand, within Atu0583 at 567.619 kb on + strand, within Atu0583 at 567.619 kb on + strand, within Atu0583 at 567.627 kb on - strand, within Atu0583 at 567.627 kb on - strand, within Atu0583 at 567.672 kb on - strand, within Atu0583 at 567.830 kb on + strand at 567.981 kb on + strand at 568.096 kb on + strand, within Atu0584 at 568.107 kb on + strand, within Atu0584 at 568.114 kb on - strand, within Atu0584 at 568.130 kb on - strand, within Atu0584 at 568.138 kb on - strand, within Atu0584 at 568.151 kb on + strand, within Atu0584 at 568.152 kb on - strand, within Atu0584 at 568.164 kb on - strand, within Atu0584 at 568.195 kb on - strand, within Atu0584 at 568.227 kb on + strand, within Atu0584 at 568.286 kb on + strand, within Atu0584 at 568.294 kb on - strand, within Atu0584 at 568.310 kb on - strand, within Atu0584 at 568.310 kb on - strand, within Atu0584 at 568.313 kb on + strand, within Atu0584 at 568.366 kb on + strand, within Atu0584 at 568.384 kb on - strand, within Atu0584 at 568.406 kb on + strand, within Atu0584 at 568.592 kb on + strand at 568.667 kb on - strand, within Atu0585 at 568.762 kb on + strand, within Atu0585 at 568.762 kb on + strand, within Atu0585 at 568.814 kb on + strand, within Atu0585 at 568.895 kb on + strand at 568.898 kb on + strand at 568.976 kb on + strand at 568.980 kb on + strand, within Atu8132 at 568.986 kb on - strand, within Atu8132 at 569.060 kb on - strand, within Atu8132 at 569.142 kb on + strand, within Atu8132 at 569.142 kb on + strand, within Atu8132 at 569.150 kb on - strand, within Atu8132 at 569.186 kb on - strand, within Atu8132 at 569.186 kb on - strand, within Atu8132 at 569.254 kb on + strand, within Atu8132 at 569.268 kb on - strand, within Atu8132 at 569.626 kb on - strand at 569.695 kb on - strand at 569.701 kb on - strand at 569.739 kb on - strand, within Atu0587 at 569.748 kb on + strand, within Atu0587 at 569.773 kb on + strand, within Atu0587 at 569.782 kb on + strand, within Atu0587 at 569.817 kb on + strand, within Atu0587 at 569.820 kb on - strand, within Atu0587 at 569.825 kb on - strand, within Atu0587 at 569.865 kb on + strand, within Atu0587
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_H10 remove 567,585 + Atu0583 0.35 +2.6 567,588 + Atu0583 0.36 +3.2 567,619 + Atu0583 0.43 +1.2 567,619 + Atu0583 0.43 +1.8 567,627 - Atu0583 0.45 +1.6 567,627 - Atu0583 0.45 +2.5 567,672 - Atu0583 0.56 +1.6 567,830 + -1.1 567,981 + +2.3 568,096 + Atu0584 0.18 +1.4 568,107 + Atu0584 0.20 +1.5 568,114 - Atu0584 0.22 +0.8 568,130 - Atu0584 0.25 -0.1 568,138 - Atu0584 0.26 +1.6 568,151 + Atu0584 0.29 +1.3 568,152 - Atu0584 0.29 +2.0 568,164 - Atu0584 0.31 +1.5 568,195 - Atu0584 0.37 +1.2 568,227 + Atu0584 0.43 +2.3 568,286 + Atu0584 0.54 +1.3 568,294 - Atu0584 0.56 -1.8 568,310 - Atu0584 0.59 +1.2 568,310 - Atu0584 0.59 +1.5 568,313 + Atu0584 0.59 +1.8 568,366 + Atu0584 0.70 +1.7 568,384 - Atu0584 0.73 +1.9 568,406 + Atu0584 0.77 +1.8 568,592 + +1.3 568,667 - Atu0585 0.30 -1.6 568,762 + Atu0585 0.56 +2.1 568,762 + Atu0585 0.56 +2.0 568,814 + Atu0585 0.70 +2.3 568,895 + +1.8 568,898 + +2.3 568,976 + +2.8 568,980 + Atu8132 0.10 -1.4 568,986 - Atu8132 0.12 +1.8 569,060 - Atu8132 0.25 +1.8 569,142 + Atu8132 0.41 +1.5 569,142 + Atu8132 0.41 +1.2 569,150 - Atu8132 0.42 +2.1 569,186 - Atu8132 0.49 +1.4 569,186 - Atu8132 0.49 +1.7 569,254 + Atu8132 0.62 +0.5 569,268 - Atu8132 0.64 +1.4 569,626 - -0.2 569,695 - -0.1 569,701 - +0.2 569,739 - Atu0587 0.15 -0.1 569,748 + Atu0587 0.16 -0.2 569,773 + Atu0587 0.20 +0.6 569,782 + Atu0587 0.21 -0.2 569,817 + Atu0587 0.26 +0.1 569,820 - Atu0587 0.27 +0.3 569,825 - Atu0587 0.27 -0.9 569,865 + Atu0587 0.33 -1.5
Or see this region's nucleotide sequence