Experiment: AgroPhage_H10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0570 and Atu0571 overlap by 4 nucleotides Atu0571 and Atu0572 are separated by 70 nucleotides Atu0572 and Atu0573 are separated by 282 nucleotides
Atu0570: Atu0570 - Chemotaxis protein, at 554,738 to 556,018
Atu0570
Atu0571: Atu0571 - chemotaxis MotD protein, at 556,015 to 557,364
Atu0571
Atu0572: Atu0572 - hypothetical protein, at 557,435 to 557,878
Atu0572
Atu0573: Atu0573 - transcriptional regulator, at 558,161 to 558,832
Atu0573
Position (kb) 556
557
558 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 555.042 kb on + strand, within Atu0570 at 555.042 kb on + strand, within Atu0570 at 555.050 kb on - strand, within Atu0570 at 555.104 kb on - strand, within Atu0570 at 555.145 kb on + strand, within Atu0570 at 555.184 kb on + strand, within Atu0570 at 555.192 kb on - strand, within Atu0570 at 555.261 kb on + strand, within Atu0570 at 555.280 kb on + strand, within Atu0570 at 555.340 kb on - strand, within Atu0570 at 555.368 kb on + strand, within Atu0570 at 555.373 kb on + strand, within Atu0570 at 555.383 kb on - strand, within Atu0570 at 555.479 kb on + strand, within Atu0570 at 555.511 kb on + strand, within Atu0570 at 555.511 kb on + strand, within Atu0570 at 555.616 kb on + strand, within Atu0570 at 555.632 kb on - strand, within Atu0570 at 555.663 kb on + strand, within Atu0570 at 555.690 kb on + strand, within Atu0570 at 555.743 kb on + strand, within Atu0570 at 555.744 kb on - strand, within Atu0570 at 555.744 kb on - strand, within Atu0570 at 555.753 kb on + strand, within Atu0570 at 555.822 kb on - strand, within Atu0570 at 555.841 kb on - strand, within Atu0570 at 556.089 kb on + strand at 556.194 kb on + strand, within Atu0571 at 556.349 kb on - strand, within Atu0571 at 556.440 kb on + strand, within Atu0571 at 556.440 kb on + strand, within Atu0571 at 556.448 kb on - strand, within Atu0571 at 556.448 kb on - strand, within Atu0571 at 556.448 kb on - strand, within Atu0571 at 556.448 kb on - strand, within Atu0571 at 556.487 kb on - strand, within Atu0571 at 556.548 kb on + strand, within Atu0571 at 556.556 kb on - strand, within Atu0571 at 556.566 kb on - strand, within Atu0571 at 556.577 kb on - strand, within Atu0571 at 556.587 kb on + strand, within Atu0571 at 556.590 kb on - strand, within Atu0571 at 556.611 kb on + strand, within Atu0571 at 556.710 kb on + strand, within Atu0571 at 556.787 kb on - strand, within Atu0571 at 556.872 kb on + strand, within Atu0571 at 556.872 kb on + strand, within Atu0571 at 556.880 kb on - strand, within Atu0571 at 556.880 kb on - strand, within Atu0571 at 556.880 kb on - strand, within Atu0571 at 556.892 kb on - strand, within Atu0571 at 556.902 kb on + strand, within Atu0571 at 556.915 kb on + strand, within Atu0571 at 556.915 kb on + strand, within Atu0571 at 556.920 kb on + strand, within Atu0571 at 556.923 kb on - strand, within Atu0571 at 556.940 kb on + strand, within Atu0571 at 556.946 kb on + strand, within Atu0571 at 556.954 kb on - strand, within Atu0571 at 557.106 kb on + strand, within Atu0571 at 557.143 kb on - strand, within Atu0571 at 557.158 kb on + strand, within Atu0571 at 557.305 kb on + strand at 557.313 kb on - strand at 557.342 kb on - strand at 557.354 kb on - strand at 557.385 kb on + strand at 557.385 kb on + strand at 557.385 kb on + strand at 557.385 kb on + strand at 557.393 kb on - strand at 557.393 kb on - strand at 557.397 kb on + strand at 557.405 kb on + strand at 557.505 kb on - strand, within Atu0572 at 557.541 kb on + strand, within Atu0572 at 557.757 kb on + strand, within Atu0572 at 558.190 kb on + strand at 558.198 kb on - strand at 558.198 kb on - strand at 558.271 kb on + strand, within Atu0573 at 558.279 kb on - strand, within Atu0573
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_H10 remove 555,042 + Atu0570 0.24 +2.1 555,042 + Atu0570 0.24 +2.2 555,050 - Atu0570 0.24 +1.5 555,104 - Atu0570 0.29 +2.7 555,145 + Atu0570 0.32 +1.8 555,184 + Atu0570 0.35 +2.2 555,192 - Atu0570 0.35 +1.9 555,261 + Atu0570 0.41 +3.4 555,280 + Atu0570 0.42 +2.1 555,340 - Atu0570 0.47 +2.1 555,368 + Atu0570 0.49 +1.8 555,373 + Atu0570 0.50 +2.4 555,383 - Atu0570 0.50 +2.2 555,479 + Atu0570 0.58 +1.3 555,511 + Atu0570 0.60 +1.9 555,511 + Atu0570 0.60 +1.9 555,616 + Atu0570 0.69 +1.8 555,632 - Atu0570 0.70 +1.9 555,663 + Atu0570 0.72 +3.2 555,690 + Atu0570 0.74 +1.6 555,743 + Atu0570 0.78 +1.8 555,744 - Atu0570 0.79 +2.2 555,744 - Atu0570 0.79 +1.9 555,753 + Atu0570 0.79 +2.3 555,822 - Atu0570 0.85 +2.3 555,841 - Atu0570 0.86 +2.3 556,089 + +1.9 556,194 + Atu0571 0.13 +1.2 556,349 - Atu0571 0.25 +1.6 556,440 + Atu0571 0.31 +2.1 556,440 + Atu0571 0.31 +0.8 556,448 - Atu0571 0.32 +2.4 556,448 - Atu0571 0.32 +2.2 556,448 - Atu0571 0.32 +1.8 556,448 - Atu0571 0.32 +0.8 556,487 - Atu0571 0.35 +1.8 556,548 + Atu0571 0.39 +2.2 556,556 - Atu0571 0.40 +0.5 556,566 - Atu0571 0.41 +2.1 556,577 - Atu0571 0.42 +1.9 556,587 + Atu0571 0.42 +1.1 556,590 - Atu0571 0.43 +2.0 556,611 + Atu0571 0.44 +1.7 556,710 + Atu0571 0.51 +1.7 556,787 - Atu0571 0.57 +1.3 556,872 + Atu0571 0.63 +1.3 556,872 + Atu0571 0.63 +1.8 556,880 - Atu0571 0.64 +1.6 556,880 - Atu0571 0.64 +2.0 556,880 - Atu0571 0.64 +2.5 556,892 - Atu0571 0.65 +1.4 556,902 + Atu0571 0.66 +1.6 556,915 + Atu0571 0.67 +0.8 556,915 + Atu0571 0.67 +0.7 556,920 + Atu0571 0.67 +1.6 556,923 - Atu0571 0.67 +0.4 556,940 + Atu0571 0.69 +2.2 556,946 + Atu0571 0.69 +0.8 556,954 - Atu0571 0.70 +1.5 557,106 + Atu0571 0.81 +1.6 557,143 - Atu0571 0.84 +0.8 557,158 + Atu0571 0.85 +2.1 557,305 + -0.2 557,313 - +1.5 557,342 - +1.9 557,354 - +2.4 557,385 + +1.3 557,385 + +2.1 557,385 + +1.5 557,385 + +1.7 557,393 - +1.4 557,393 - +0.8 557,397 + +1.8 557,405 + +1.5 557,505 - Atu0572 0.16 +1.9 557,541 + Atu0572 0.24 -0.2 557,757 + Atu0572 0.73 +2.4 558,190 + -2.2 558,198 - +2.3 558,198 - +1.6 558,271 + Atu0573 0.16 +2.6 558,279 - Atu0573 0.18 +1.8
Or see this region's nucleotide sequence