Strain Fitness in Agrobacterium fabrum C58 around Atu0570

Experiment: AgroPhage_H10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0569 and Atu0570 overlap by 4 nucleotidesAtu0570 and Atu0571 overlap by 4 nucleotides Atu0569: Atu0569 - flagellar motor protein, PAL/OmpA family, at 553,440 to 554,741 Atu0569 Atu0570: Atu0570 - Chemotaxis protein, at 554,738 to 556,018 Atu0570 Atu0571: Atu0571 - chemotaxis MotD protein, at 556,015 to 557,364 Atu0571 Position (kb) 554 555 556 557Strain fitness (log2 ratio) -1 0 1 2 3at 553.766 kb on - strand, within Atu0569at 553.782 kb on + strand, within Atu0569at 553.796 kb on - strand, within Atu0569at 553.805 kb on - strand, within Atu0569at 553.847 kb on + strand, within Atu0569at 553.855 kb on - strand, within Atu0569at 553.892 kb on + strand, within Atu0569at 553.910 kb on + strand, within Atu0569at 554.048 kb on - strand, within Atu0569at 554.088 kb on + strand, within Atu0569at 554.095 kb on - strand, within Atu0569at 554.124 kb on + strand, within Atu0569at 554.212 kb on + strand, within Atu0569at 554.237 kb on + strand, within Atu0569at 554.285 kb on + strand, within Atu0569at 554.286 kb on + strand, within Atu0569at 554.448 kb on + strand, within Atu0569at 554.537 kb on + strand, within Atu0569at 554.544 kb on + strand, within Atu0569at 554.544 kb on + strand, within Atu0569at 554.566 kb on - strand, within Atu0569at 554.600 kb on - strand, within Atu0569at 554.686 kb on - strandat 554.854 kb on - strandat 554.881 kb on + strand, within Atu0570at 554.951 kb on + strand, within Atu0570at 554.951 kb on + strand, within Atu0570at 555.010 kb on + strand, within Atu0570at 555.013 kb on - strand, within Atu0570at 555.042 kb on + strand, within Atu0570at 555.042 kb on + strand, within Atu0570at 555.050 kb on - strand, within Atu0570at 555.104 kb on - strand, within Atu0570at 555.145 kb on + strand, within Atu0570at 555.184 kb on + strand, within Atu0570at 555.192 kb on - strand, within Atu0570at 555.261 kb on + strand, within Atu0570at 555.280 kb on + strand, within Atu0570at 555.340 kb on - strand, within Atu0570at 555.368 kb on + strand, within Atu0570at 555.373 kb on + strand, within Atu0570at 555.383 kb on - strand, within Atu0570at 555.479 kb on + strand, within Atu0570at 555.511 kb on + strand, within Atu0570at 555.511 kb on + strand, within Atu0570at 555.616 kb on + strand, within Atu0570at 555.632 kb on - strand, within Atu0570at 555.663 kb on + strand, within Atu0570at 555.690 kb on + strand, within Atu0570at 555.743 kb on + strand, within Atu0570at 555.744 kb on - strand, within Atu0570at 555.744 kb on - strand, within Atu0570at 555.753 kb on + strand, within Atu0570at 555.822 kb on - strand, within Atu0570at 555.841 kb on - strand, within Atu0570at 556.089 kb on + strandat 556.194 kb on + strand, within Atu0571at 556.349 kb on - strand, within Atu0571at 556.440 kb on + strand, within Atu0571at 556.440 kb on + strand, within Atu0571at 556.448 kb on - strand, within Atu0571at 556.448 kb on - strand, within Atu0571at 556.448 kb on - strand, within Atu0571at 556.448 kb on - strand, within Atu0571at 556.487 kb on - strand, within Atu0571at 556.548 kb on + strand, within Atu0571at 556.556 kb on - strand, within Atu0571at 556.566 kb on - strand, within Atu0571at 556.577 kb on - strand, within Atu0571at 556.587 kb on + strand, within Atu0571at 556.590 kb on - strand, within Atu0571at 556.611 kb on + strand, within Atu0571at 556.710 kb on + strand, within Atu0571at 556.787 kb on - strand, within Atu0571at 556.872 kb on + strand, within Atu0571at 556.872 kb on + strand, within Atu0571at 556.880 kb on - strand, within Atu0571at 556.880 kb on - strand, within Atu0571at 556.880 kb on - strand, within Atu0571at 556.892 kb on - strand, within Atu0571at 556.902 kb on + strand, within Atu0571at 556.915 kb on + strand, within Atu0571at 556.915 kb on + strand, within Atu0571at 556.920 kb on + strand, within Atu0571at 556.923 kb on - strand, within Atu0571at 556.940 kb on + strand, within Atu0571at 556.946 kb on + strand, within Atu0571at 556.954 kb on - strand, within Atu0571

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_H10
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553,766 - Atu0569 0.25 +1.6
553,782 + Atu0569 0.26 +0.8
553,796 - Atu0569 0.27 +2.4
553,805 - Atu0569 0.28 +2.0
553,847 + Atu0569 0.31 +2.9
553,855 - Atu0569 0.32 +1.9
553,892 + Atu0569 0.35 +2.5
553,910 + Atu0569 0.36 +1.7
554,048 - Atu0569 0.47 +1.4
554,088 + Atu0569 0.50 +1.3
554,095 - Atu0569 0.50 +2.4
554,124 + Atu0569 0.53 +2.5
554,212 + Atu0569 0.59 +1.4
554,237 + Atu0569 0.61 +1.5
554,285 + Atu0569 0.65 +2.1
554,286 + Atu0569 0.65 +2.3
554,448 + Atu0569 0.77 +2.5
554,537 + Atu0569 0.84 +2.2
554,544 + Atu0569 0.85 +1.9
554,544 + Atu0569 0.85 +1.4
554,566 - Atu0569 0.86 +2.3
554,600 - Atu0569 0.89 +1.4
554,686 - +1.8
554,854 - +0.4
554,881 + Atu0570 0.11 +1.9
554,951 + Atu0570 0.17 +1.3
554,951 + Atu0570 0.17 +1.9
555,010 + Atu0570 0.21 +2.5
555,013 - Atu0570 0.21 +1.8
555,042 + Atu0570 0.24 +2.1
555,042 + Atu0570 0.24 +2.2
555,050 - Atu0570 0.24 +1.5
555,104 - Atu0570 0.29 +2.7
555,145 + Atu0570 0.32 +1.8
555,184 + Atu0570 0.35 +2.2
555,192 - Atu0570 0.35 +1.9
555,261 + Atu0570 0.41 +3.4
555,280 + Atu0570 0.42 +2.1
555,340 - Atu0570 0.47 +2.1
555,368 + Atu0570 0.49 +1.8
555,373 + Atu0570 0.50 +2.4
555,383 - Atu0570 0.50 +2.2
555,479 + Atu0570 0.58 +1.3
555,511 + Atu0570 0.60 +1.9
555,511 + Atu0570 0.60 +1.9
555,616 + Atu0570 0.69 +1.8
555,632 - Atu0570 0.70 +1.9
555,663 + Atu0570 0.72 +3.2
555,690 + Atu0570 0.74 +1.6
555,743 + Atu0570 0.78 +1.8
555,744 - Atu0570 0.79 +2.2
555,744 - Atu0570 0.79 +1.9
555,753 + Atu0570 0.79 +2.3
555,822 - Atu0570 0.85 +2.3
555,841 - Atu0570 0.86 +2.3
556,089 + +1.9
556,194 + Atu0571 0.13 +1.2
556,349 - Atu0571 0.25 +1.6
556,440 + Atu0571 0.31 +2.1
556,440 + Atu0571 0.31 +0.8
556,448 - Atu0571 0.32 +2.4
556,448 - Atu0571 0.32 +2.2
556,448 - Atu0571 0.32 +1.8
556,448 - Atu0571 0.32 +0.8
556,487 - Atu0571 0.35 +1.8
556,548 + Atu0571 0.39 +2.2
556,556 - Atu0571 0.40 +0.5
556,566 - Atu0571 0.41 +2.1
556,577 - Atu0571 0.42 +1.9
556,587 + Atu0571 0.42 +1.1
556,590 - Atu0571 0.43 +2.0
556,611 + Atu0571 0.44 +1.7
556,710 + Atu0571 0.51 +1.7
556,787 - Atu0571 0.57 +1.3
556,872 + Atu0571 0.63 +1.3
556,872 + Atu0571 0.63 +1.8
556,880 - Atu0571 0.64 +1.6
556,880 - Atu0571 0.64 +2.0
556,880 - Atu0571 0.64 +2.5
556,892 - Atu0571 0.65 +1.4
556,902 + Atu0571 0.66 +1.6
556,915 + Atu0571 0.67 +0.8
556,915 + Atu0571 0.67 +0.7
556,920 + Atu0571 0.67 +1.6
556,923 - Atu0571 0.67 +0.4
556,940 + Atu0571 0.69 +2.2
556,946 + Atu0571 0.69 +0.8
556,954 - Atu0571 0.70 +1.5

Or see this region's nucleotide sequence