Experiment: AgroPhage_H10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0539 and Atu0540 are separated by 102 nucleotides Atu0540 and Atu0541 are separated by 155 nucleotides Atu0541 and Atu0542 are separated by 188 nucleotides Atu0542 and Atu0543 are separated by 241 nucleotides
Atu0539: Atu0539 - UDP-N-acetylglucosamine, at 529,856 to 531,148
Atu0539
Atu0540: Atu0540 - hypothetical protein, at 531,251 to 531,517
Atu0540
Atu0541: Atu0541 - tRNA-Thr, at 531,673 to 531,747
Atu0541
Atu0542: Atu0542 - flagellin, at 531,936 to 532,877
Atu0542
Atu0543: Atu0543 - flaB, at 533,119 to 534,081
Atu0543
Position (kb) 531
532
533 Strain fitness (log2 ratio) -2
-1
0
1
2 at 531.309 kb on - strand, within Atu0540 at 531.334 kb on - strand, within Atu0540 at 531.425 kb on - strand, within Atu0540 at 531.496 kb on + strand at 531.500 kb on + strand at 531.830 kb on - strand at 531.895 kb on + strand at 531.904 kb on + strand at 532.024 kb on + strand at 532.024 kb on + strand at 532.032 kb on - strand, within Atu0542 at 532.032 kb on - strand, within Atu0542 at 532.032 kb on - strand, within Atu0542 at 532.052 kb on + strand, within Atu0542 at 532.071 kb on + strand, within Atu0542 at 532.293 kb on - strand, within Atu0542 at 532.308 kb on - strand, within Atu0542 at 532.416 kb on + strand, within Atu0542 at 532.464 kb on - strand, within Atu0542 at 532.511 kb on - strand, within Atu0542 at 532.516 kb on - strand, within Atu0542 at 532.538 kb on + strand, within Atu0542 at 532.651 kb on + strand, within Atu0542 at 532.674 kb on + strand, within Atu0542 at 532.786 kb on + strand at 532.838 kb on - strand at 533.055 kb on + strand at 533.055 kb on + strand at 533.063 kb on - strand at 533.172 kb on + strand at 533.185 kb on + strand at 533.204 kb on + strand at 533.204 kb on + strand at 533.212 kb on - strand at 533.212 kb on - strand at 533.212 kb on - strand at 533.212 kb on - strand at 533.212 kb on - strand at 533.212 kb on - strand at 533.270 kb on + strand, within Atu0543 at 533.304 kb on + strand, within Atu0543 at 533.312 kb on + strand, within Atu0543 at 533.376 kb on + strand, within Atu0543 at 533.376 kb on + strand, within Atu0543 at 533.424 kb on + strand, within Atu0543 at 533.438 kb on + strand, within Atu0543 at 533.470 kb on + strand, within Atu0543 at 533.478 kb on - strand, within Atu0543 at 533.499 kb on + strand, within Atu0543 at 533.507 kb on - strand, within Atu0543 at 533.538 kb on - strand, within Atu0543 at 533.560 kb on - strand, within Atu0543 at 533.622 kb on + strand, within Atu0543 at 533.630 kb on - strand, within Atu0543 at 533.637 kb on + strand, within Atu0543 at 533.645 kb on - strand, within Atu0543 at 533.650 kb on - strand, within Atu0543 at 533.703 kb on - strand, within Atu0543 at 533.753 kb on + strand, within Atu0543 at 533.855 kb on + strand, within Atu0543 at 533.855 kb on + strand, within Atu0543 at 533.863 kb on - strand, within Atu0543
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_H10 remove 531,309 - Atu0540 0.22 -0.6 531,334 - Atu0540 0.31 -0.3 531,425 - Atu0540 0.65 -0.8 531,496 + -0.1 531,500 + +0.2 531,830 - +0.3 531,895 + -1.8 531,904 + -0.8 532,024 + +0.9 532,024 + +0.0 532,032 - Atu0542 0.10 +0.8 532,032 - Atu0542 0.10 +0.4 532,032 - Atu0542 0.10 -0.6 532,052 + Atu0542 0.12 -0.5 532,071 + Atu0542 0.14 +0.5 532,293 - Atu0542 0.38 +0.1 532,308 - Atu0542 0.39 -0.3 532,416 + Atu0542 0.51 +0.3 532,464 - Atu0542 0.56 +0.2 532,511 - Atu0542 0.61 +0.7 532,516 - Atu0542 0.62 +0.1 532,538 + Atu0542 0.64 -1.1 532,651 + Atu0542 0.76 -0.9 532,674 + Atu0542 0.78 -0.4 532,786 + -1.0 532,838 - +0.9 533,055 + +1.5 533,055 + +0.2 533,063 - +0.4 533,172 + +2.0 533,185 + +1.7 533,204 + +0.9 533,204 + +1.8 533,212 - +1.7 533,212 - +1.9 533,212 - +1.7 533,212 - +1.5 533,212 - +1.1 533,212 - +1.7 533,270 + Atu0543 0.16 +1.7 533,304 + Atu0543 0.19 +2.1 533,312 + Atu0543 0.20 +2.0 533,376 + Atu0543 0.27 +1.5 533,376 + Atu0543 0.27 +1.6 533,424 + Atu0543 0.32 +1.0 533,438 + Atu0543 0.33 +1.2 533,470 + Atu0543 0.36 +1.8 533,478 - Atu0543 0.37 +1.0 533,499 + Atu0543 0.39 +1.3 533,507 - Atu0543 0.40 +2.2 533,538 - Atu0543 0.44 +1.8 533,560 - Atu0543 0.46 +1.5 533,622 + Atu0543 0.52 +1.2 533,630 - Atu0543 0.53 +2.2 533,637 + Atu0543 0.54 +2.3 533,645 - Atu0543 0.55 +2.3 533,650 - Atu0543 0.55 +2.4 533,703 - Atu0543 0.61 +1.6 533,753 + Atu0543 0.66 +1.4 533,855 + Atu0543 0.76 +0.6 533,855 + Atu0543 0.76 +2.0 533,863 - Atu0543 0.77 +1.4
Or see this region's nucleotide sequence