Strain Fitness in Agrobacterium fabrum C58 around Atu5422

Experiment: AgroPhage_H04

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu5421 and Atu5422 are separated by 9 nucleotidesAtu5422 and Atu5423 are separated by 3 nucleotides Atu5421: Atu5421 - ABC transporter membrane spanning protein (putrescine), at 415,965 to 416,948 Atu5421 Atu5422: Atu5422 - ABC transporter membrane spanning protein (putrescine), at 416,958 to 417,749 Atu5422 Atu5423: Atu5423 - ABC transporter nucleotide binding/ATPase (putrescine), at 417,753 to 418,823 Atu5423 Position (kb) 416 417 418Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 415.970 kb on + strandat 415.981 kb on + strandat 415.981 kb on + strandat 416.031 kb on - strandat 416.033 kb on + strandat 416.055 kb on + strandat 416.055 kb on + strandat 416.078 kb on - strand, within Atu5421at 416.160 kb on - strand, within Atu5421at 416.206 kb on - strand, within Atu5421at 416.247 kb on + strand, within Atu5421at 416.252 kb on + strand, within Atu5421at 416.255 kb on - strand, within Atu5421at 416.311 kb on + strand, within Atu5421at 416.417 kb on + strand, within Atu5421at 416.430 kb on + strand, within Atu5421at 416.438 kb on - strand, within Atu5421at 416.481 kb on - strand, within Atu5421at 416.539 kb on - strand, within Atu5421at 416.547 kb on + strand, within Atu5421at 416.552 kb on + strand, within Atu5421at 416.654 kb on - strand, within Atu5421at 416.657 kb on - strand, within Atu5421at 416.691 kb on - strand, within Atu5421at 416.746 kb on - strand, within Atu5421at 416.774 kb on - strand, within Atu5421at 416.820 kb on + strand, within Atu5421at 416.838 kb on - strand, within Atu5421at 416.846 kb on + strand, within Atu5421at 416.867 kb on - strandat 416.951 kb on - strandat 416.975 kb on - strandat 417.012 kb on - strandat 417.061 kb on + strand, within Atu5422at 417.069 kb on - strand, within Atu5422at 417.124 kb on - strand, within Atu5422at 417.305 kb on + strand, within Atu5422at 417.313 kb on - strand, within Atu5422at 417.350 kb on - strand, within Atu5422at 417.377 kb on + strand, within Atu5422at 417.377 kb on + strand, within Atu5422at 417.377 kb on + strand, within Atu5422at 417.385 kb on - strand, within Atu5422at 417.385 kb on - strand, within Atu5422at 417.425 kb on - strand, within Atu5422at 417.425 kb on - strand, within Atu5422at 417.433 kb on + strand, within Atu5422at 417.520 kb on - strand, within Atu5422at 417.520 kb on - strand, within Atu5422at 417.565 kb on + strand, within Atu5422at 417.586 kb on + strand, within Atu5422at 417.586 kb on + strand, within Atu5422at 417.594 kb on - strand, within Atu5422at 417.594 kb on - strand, within Atu5422at 417.621 kb on + strand, within Atu5422at 417.662 kb on + strand, within Atu5422at 417.675 kb on - strandat 417.723 kb on - strandat 417.756 kb on - strandat 417.756 kb on - strandat 417.788 kb on + strandat 417.802 kb on + strandat 417.824 kb on + strandat 417.825 kb on - strandat 417.847 kb on + strandat 417.857 kb on + strandat 417.873 kb on - strand, within Atu5423at 417.899 kb on + strand, within Atu5423at 417.976 kb on + strand, within Atu5423at 417.976 kb on + strand, within Atu5423at 418.032 kb on - strand, within Atu5423at 418.088 kb on + strand, within Atu5423at 418.160 kb on - strand, within Atu5423at 418.187 kb on + strand, within Atu5423at 418.249 kb on + strand, within Atu5423at 418.250 kb on - strand, within Atu5423at 418.397 kb on + strand, within Atu5423at 418.400 kb on - strand, within Atu5423at 418.410 kb on + strand, within Atu5423at 418.507 kb on - strand, within Atu5423at 418.567 kb on - strand, within Atu5423at 418.567 kb on - strand, within Atu5423at 418.595 kb on + strand, within Atu5423at 418.603 kb on - strand, within Atu5423at 418.613 kb on - strand, within Atu5423at 418.673 kb on + strand, within Atu5423at 418.673 kb on + strand, within Atu5423at 418.681 kb on - strand, within Atu5423

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Per-strain Table

Position Strand Gene LocusTag Fraction AgroPhage_H04
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415,970 + -0.5
415,981 + -1.2
415,981 + -1.7
416,031 - +0.1
416,033 + +0.2
416,055 + +0.6
416,055 + -0.2
416,078 - Atu5421 0.11 +0.2
416,160 - Atu5421 0.20 -0.6
416,206 - Atu5421 0.24 -0.4
416,247 + Atu5421 0.29 +0.9
416,252 + Atu5421 0.29 +2.5
416,255 - Atu5421 0.29 +0.1
416,311 + Atu5421 0.35 -1.9
416,417 + Atu5421 0.46 +0.9
416,430 + Atu5421 0.47 -0.7
416,438 - Atu5421 0.48 +1.6
416,481 - Atu5421 0.52 +1.1
416,539 - Atu5421 0.58 +0.2
416,547 + Atu5421 0.59 -0.2
416,552 + Atu5421 0.60 +2.0
416,654 - Atu5421 0.70 -1.5
416,657 - Atu5421 0.70 +0.6
416,691 - Atu5421 0.74 +0.1
416,746 - Atu5421 0.79 -0.5
416,774 - Atu5421 0.82 -0.5
416,820 + Atu5421 0.87 -2.1
416,838 - Atu5421 0.89 -3.3
416,846 + Atu5421 0.90 -0.0
416,867 - +0.2
416,951 - +0.4
416,975 - +0.2
417,012 - +0.8
417,061 + Atu5422 0.13 +0.4
417,069 - Atu5422 0.14 +0.7
417,124 - Atu5422 0.21 +1.5
417,305 + Atu5422 0.44 +0.5
417,313 - Atu5422 0.45 -0.7
417,350 - Atu5422 0.49 -0.2
417,377 + Atu5422 0.53 +1.3
417,377 + Atu5422 0.53 +1.8
417,377 + Atu5422 0.53 +0.2
417,385 - Atu5422 0.54 +0.4
417,385 - Atu5422 0.54 -2.5
417,425 - Atu5422 0.59 +0.4
417,425 - Atu5422 0.59 +1.4
417,433 + Atu5422 0.60 -2.4
417,520 - Atu5422 0.71 +0.4
417,520 - Atu5422 0.71 -1.1
417,565 + Atu5422 0.77 +0.1
417,586 + Atu5422 0.79 -2.3
417,586 + Atu5422 0.79 -0.0
417,594 - Atu5422 0.80 +1.1
417,594 - Atu5422 0.80 -0.7
417,621 + Atu5422 0.84 -0.8
417,662 + Atu5422 0.89 +0.4
417,675 - +0.4
417,723 - -2.3
417,756 - +0.1
417,756 - -0.9
417,788 + +0.4
417,802 + +0.2
417,824 + -0.0
417,825 - -0.6
417,847 + +0.5
417,857 + +0.3
417,873 - Atu5423 0.11 +0.3
417,899 + Atu5423 0.14 -0.1
417,976 + Atu5423 0.21 +1.1
417,976 + Atu5423 0.21 +0.2
418,032 - Atu5423 0.26 +0.7
418,088 + Atu5423 0.31 +0.1
418,160 - Atu5423 0.38 +0.7
418,187 + Atu5423 0.41 -0.1
418,249 + Atu5423 0.46 -0.2
418,250 - Atu5423 0.46 +0.8
418,397 + Atu5423 0.60 -0.4
418,400 - Atu5423 0.60 +0.3
418,410 + Atu5423 0.61 -1.1
418,507 - Atu5423 0.70 -0.2
418,567 - Atu5423 0.76 -0.5
418,567 - Atu5423 0.76 +0.1
418,595 + Atu5423 0.79 +0.2
418,603 - Atu5423 0.79 -1.2
418,613 - Atu5423 0.80 +0.4
418,673 + Atu5423 0.86 +0.5
418,673 + Atu5423 0.86 -1.2
418,681 - Atu5423 0.87 +1.4

Or see this region's nucleotide sequence