Experiment: AgroPhage_H04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3806 and Atu3807 are separated by 123 nucleotides Atu3807 and Atu3808 are separated by 67 nucleotides Atu3808 and Atu3809 are separated by 124 nucleotides
Atu3806: Atu3806 - methionine gamma-lyase, at 902,788 to 904,071
Atu3806
Atu3807: Atu3807 - AsnC family transcriptional regulator, at 904,195 to 904,653
Atu3807
Atu3808: Atu3808 - LysR family transcriptional regulator, at 904,721 to 905,626
Atu3808
Atu3809: Atu3809 - oxidoreductase, at 905,751 to 906,617
Atu3809
Position (kb) 904
905
906 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 903.765 kb on + strand, within Atu3806 at 903.903 kb on + strand, within Atu3806 at 903.912 kb on - strand, within Atu3806 at 903.916 kb on - strand, within Atu3806 at 903.953 kb on + strand at 904.054 kb on - strand at 904.064 kb on - strand at 904.081 kb on + strand at 904.226 kb on + strand at 904.226 kb on + strand at 904.226 kb on + strand at 904.234 kb on - strand at 904.234 kb on - strand at 904.361 kb on - strand, within Atu3807 at 904.402 kb on + strand, within Atu3807 at 904.402 kb on + strand, within Atu3807 at 904.402 kb on + strand, within Atu3807 at 904.524 kb on + strand, within Atu3807 at 904.606 kb on + strand, within Atu3807 at 904.614 kb on - strand at 904.670 kb on + strand at 904.683 kb on - strand at 904.683 kb on - strand at 904.794 kb on + strand at 904.905 kb on + strand, within Atu3808 at 904.931 kb on + strand, within Atu3808 at 905.023 kb on + strand, within Atu3808 at 905.069 kb on - strand, within Atu3808 at 905.101 kb on - strand, within Atu3808 at 905.124 kb on - strand, within Atu3808 at 905.171 kb on + strand, within Atu3808 at 905.303 kb on + strand, within Atu3808 at 905.311 kb on - strand, within Atu3808 at 905.373 kb on + strand, within Atu3808 at 905.373 kb on + strand, within Atu3808 at 905.381 kb on - strand, within Atu3808 at 905.551 kb on - strand at 905.560 kb on - strand at 905.591 kb on + strand at 905.617 kb on - strand at 905.629 kb on + strand at 905.644 kb on - strand at 905.676 kb on + strand at 905.684 kb on - strand at 905.701 kb on - strand at 905.713 kb on + strand at 905.713 kb on + strand at 905.721 kb on - strand at 905.721 kb on - strand at 905.721 kb on - strand at 905.734 kb on - strand at 905.734 kb on - strand at 905.746 kb on + strand at 905.766 kb on - strand at 905.768 kb on + strand at 905.776 kb on - strand at 905.981 kb on + strand, within Atu3809 at 906.007 kb on + strand, within Atu3809 at 906.019 kb on + strand, within Atu3809 at 906.069 kb on + strand, within Atu3809 at 906.082 kb on - strand, within Atu3809 at 906.115 kb on - strand, within Atu3809 at 906.360 kb on + strand, within Atu3809 at 906.425 kb on + strand, within Atu3809 at 906.425 kb on + strand, within Atu3809 at 906.471 kb on + strand, within Atu3809 at 906.479 kb on - strand, within Atu3809 at 906.537 kb on + strand at 906.545 kb on - strand at 906.545 kb on - strand at 906.592 kb on - strand at 906.613 kb on + strand at 906.621 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_H04 remove 903,765 + Atu3806 0.76 -0.6 903,903 + Atu3806 0.87 -1.2 903,912 - Atu3806 0.88 -1.9 903,916 - Atu3806 0.88 +0.3 903,953 + -1.6 904,054 - +0.8 904,064 - +0.1 904,081 + -0.2 904,226 + -1.9 904,226 + -0.7 904,226 + -0.3 904,234 - -0.2 904,234 - +0.4 904,361 - Atu3807 0.36 +1.1 904,402 + Atu3807 0.45 +0.2 904,402 + Atu3807 0.45 +2.2 904,402 + Atu3807 0.45 +0.0 904,524 + Atu3807 0.72 +0.1 904,606 + Atu3807 0.90 -0.0 904,614 - -0.9 904,670 + -1.6 904,683 - +0.3 904,683 - +0.3 904,794 + -0.1 904,905 + Atu3808 0.20 +1.0 904,931 + Atu3808 0.23 -0.5 905,023 + Atu3808 0.33 +0.8 905,069 - Atu3808 0.38 -0.1 905,101 - Atu3808 0.42 +0.3 905,124 - Atu3808 0.44 -2.8 905,171 + Atu3808 0.50 -1.4 905,303 + Atu3808 0.64 -0.5 905,311 - Atu3808 0.65 +1.0 905,373 + Atu3808 0.72 +0.0 905,373 + Atu3808 0.72 +0.9 905,381 - Atu3808 0.73 +0.4 905,551 - +0.4 905,560 - -1.0 905,591 + +0.2 905,617 - -0.3 905,629 + +0.5 905,644 - +1.4 905,676 + +0.2 905,684 - -1.3 905,701 - +0.2 905,713 + -0.1 905,713 + -0.9 905,721 - +0.0 905,721 - +1.2 905,721 - -1.2 905,734 - -0.5 905,734 - -0.0 905,746 + +1.1 905,766 - +0.2 905,768 + -0.4 905,776 - +0.1 905,981 + Atu3809 0.27 -2.8 906,007 + Atu3809 0.30 -1.0 906,019 + Atu3809 0.31 -1.5 906,069 + Atu3809 0.37 -1.2 906,082 - Atu3809 0.38 -0.5 906,115 - Atu3809 0.42 +0.4 906,360 + Atu3809 0.70 +0.0 906,425 + Atu3809 0.78 -0.1 906,425 + Atu3809 0.78 -1.4 906,471 + Atu3809 0.83 -0.4 906,479 - Atu3809 0.84 +0.8 906,537 + -0.4 906,545 - +0.7 906,545 - +0.2 906,592 - +0.3 906,613 + -0.3 906,621 - +0.7
Or see this region's nucleotide sequence