Experiment: AgroPhage_H04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0775 and Atu0776 overlap by 4 nucleotides Atu0776 and Atu0777 are separated by 176 nucleotides Atu0777 and Atu0778 are separated by 14 nucleotides
Atu0775: Atu0775 - homoserine kinase, at 770,874 to 771,842
Atu0775
Atu0776: Atu0776 - ribonuclease H, at 771,839 to 772,279
Atu0776
Atu0777: Atu0777 - hypothetical protein, at 772,456 to 772,764
Atu0777
Atu0778: Atu0778 - hypothetical protein, at 772,779 to 775,319
Atu0778
Position (kb) 772
773 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 772.254 kb on + strand at 772.262 kb on - strand at 772.292 kb on - strand at 772.309 kb on - strand at 772.318 kb on - strand at 772.482 kb on - strand at 772.595 kb on - strand, within Atu0777 at 772.814 kb on + strand at 772.912 kb on - strand at 772.935 kb on + strand at 773.052 kb on + strand, within Atu0778 at 773.052 kb on + strand, within Atu0778 at 773.060 kb on - strand, within Atu0778 at 773.093 kb on + strand, within Atu0778 at 773.180 kb on - strand, within Atu0778 at 773.204 kb on + strand, within Atu0778 at 773.204 kb on + strand, within Atu0778 at 773.240 kb on + strand, within Atu0778 at 773.370 kb on + strand, within Atu0778 at 773.429 kb on - strand, within Atu0778 at 773.458 kb on - strand, within Atu0778 at 773.489 kb on - strand, within Atu0778
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_H04 remove 772,254 + -0.2 772,262 - +0.4 772,292 - +1.5 772,309 - -0.4 772,318 - -0.7 772,482 - +0.6 772,595 - Atu0777 0.45 -3.1 772,814 + -1.1 772,912 - -1.2 772,935 + -1.7 773,052 + Atu0778 0.11 +0.3 773,052 + Atu0778 0.11 +0.2 773,060 - Atu0778 0.11 -0.1 773,093 + Atu0778 0.12 -0.1 773,180 - Atu0778 0.16 -0.3 773,204 + Atu0778 0.17 +0.3 773,204 + Atu0778 0.17 -1.0 773,240 + Atu0778 0.18 +0.8 773,370 + Atu0778 0.23 -0.4 773,429 - Atu0778 0.26 -1.4 773,458 - Atu0778 0.27 +0.0 773,489 - Atu0778 0.28 -0.4
Or see this region's nucleotide sequence