Experiment: AgroPhage_H04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0628 and Atu0629 overlap by 14 nucleotides Atu0629 and Atu0630 are separated by 198 nucleotides Atu0630 and Atu0631 are separated by 91 nucleotides Atu0631 and Atu0632 overlap by 4 nucleotides
Atu0628: Atu0628 - two component sensor kinase, at 616,678 to 618,033
Atu0628
Atu0629: Atu0629 - two component response regulator, at 618,020 to 618,697
Atu0629
Atu0630: Atu0630 - hypothetical protein, at 618,896 to 619,165
Atu0630
Atu0631: Atu0631 - molybdenum cofactor biosynthesis protein B, at 619,257 to 619,826
Atu0631
Atu0632: Atu0632 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 619,823 to 620,722
Atu0632
Position (kb) 618
619
620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 617.917 kb on + strand at 617.925 kb on - strand at 617.963 kb on + strand at 617.986 kb on - strand at 618.062 kb on + strand at 618.114 kb on - strand, within Atu0629 at 618.209 kb on + strand, within Atu0629 at 618.237 kb on + strand, within Atu0629 at 618.271 kb on + strand, within Atu0629 at 618.324 kb on - strand, within Atu0629 at 618.393 kb on + strand, within Atu0629 at 618.440 kb on + strand, within Atu0629 at 618.440 kb on + strand, within Atu0629 at 618.440 kb on + strand, within Atu0629 at 618.442 kb on + strand, within Atu0629 at 618.448 kb on - strand, within Atu0629 at 618.448 kb on - strand, within Atu0629 at 618.460 kb on - strand, within Atu0629 at 618.514 kb on + strand, within Atu0629 at 618.514 kb on + strand, within Atu0629 at 618.514 kb on + strand, within Atu0629 at 618.514 kb on + strand, within Atu0629 at 618.514 kb on + strand, within Atu0629 at 618.522 kb on - strand, within Atu0629 at 618.545 kb on + strand, within Atu0629 at 618.560 kb on + strand, within Atu0629 at 618.560 kb on + strand, within Atu0629 at 618.568 kb on - strand, within Atu0629 at 618.600 kb on - strand, within Atu0629 at 618.600 kb on - strand, within Atu0629 at 618.604 kb on + strand, within Atu0629 at 618.742 kb on + strand at 619.047 kb on + strand, within Atu0630 at 619.057 kb on + strand, within Atu0630 at 619.207 kb on + strand at 619.207 kb on + strand at 619.207 kb on + strand at 619.215 kb on - strand at 619.219 kb on + strand at 619.225 kb on - strand at 619.319 kb on - strand, within Atu0631 at 619.409 kb on - strand, within Atu0631 at 619.411 kb on + strand, within Atu0631 at 619.436 kb on - strand, within Atu0631 at 619.544 kb on + strand, within Atu0631 at 619.586 kb on + strand, within Atu0631 at 619.604 kb on + strand, within Atu0631 at 619.627 kb on - strand, within Atu0631 at 619.644 kb on - strand, within Atu0631 at 619.749 kb on + strand, within Atu0631 at 619.822 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_H04 remove 617,917 + +0.3 617,925 - +0.1 617,963 + -1.3 617,986 - +0.3 618,062 + -1.5 618,114 - Atu0629 0.14 -1.1 618,209 + Atu0629 0.28 -2.1 618,237 + Atu0629 0.32 -1.2 618,271 + Atu0629 0.37 +0.1 618,324 - Atu0629 0.45 -0.8 618,393 + Atu0629 0.55 -3.1 618,440 + Atu0629 0.62 -0.4 618,440 + Atu0629 0.62 -1.6 618,440 + Atu0629 0.62 -0.6 618,442 + Atu0629 0.62 -2.2 618,448 - Atu0629 0.63 -2.0 618,448 - Atu0629 0.63 +0.4 618,460 - Atu0629 0.65 +0.2 618,514 + Atu0629 0.73 +0.8 618,514 + Atu0629 0.73 -0.9 618,514 + Atu0629 0.73 -0.7 618,514 + Atu0629 0.73 -0.1 618,514 + Atu0629 0.73 -1.1 618,522 - Atu0629 0.74 -1.4 618,545 + Atu0629 0.77 +0.8 618,560 + Atu0629 0.80 +1.8 618,560 + Atu0629 0.80 +0.1 618,568 - Atu0629 0.81 -0.3 618,600 - Atu0629 0.86 +0.2 618,600 - Atu0629 0.86 -1.3 618,604 + Atu0629 0.86 +0.1 618,742 + -0.3 619,047 + Atu0630 0.56 -1.6 619,057 + Atu0630 0.60 -0.5 619,207 + +0.2 619,207 + -0.0 619,207 + +0.3 619,215 - -1.4 619,219 + -1.6 619,225 - +1.4 619,319 - Atu0631 0.11 -0.9 619,409 - Atu0631 0.27 -0.2 619,411 + Atu0631 0.27 -1.2 619,436 - Atu0631 0.31 +0.3 619,544 + Atu0631 0.50 -0.8 619,586 + Atu0631 0.58 -0.3 619,604 + Atu0631 0.61 +0.3 619,627 - Atu0631 0.65 -0.2 619,644 - Atu0631 0.68 -0.4 619,749 + Atu0631 0.86 -2.1 619,822 - -0.6
Or see this region's nucleotide sequence