Experiment: AgroPhage_H04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0551 and Atu0552 are separated by 20 nucleotides Atu0552 and Atu0553 are separated by 18 nucleotides Atu0553 and Atu0554 overlap by 4 nucleotides Atu0554 and Atu0555 are separated by 3 nucleotides Atu0555 and Atu0556 are separated by 170 nucleotides
Atu0551: Atu0551 - flagellar protein FLGA precursor, at 539,408 to 539,896
Atu0551
Atu0552: Atu0552 - flagellar basal-body rod protein, at 539,917 to 540,705
Atu0552
Atu0553: Atu0553 - flagellar hook-basal body complex protein, at 540,724 to 541,062
Atu0553
Atu0554: Atu0554 - flagellar basal-body rod protein, at 541,059 to 541,478
Atu0554
Atu0555: Atu0555 - flagellar basal-body rod protein FlgB, at 541,482 to 541,874
Atu0555
Atu0556: Atu0556 - hypothetical protein, at 542,045 to 542,449
Atu0556
Position (kb) 540
541
542 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 539.758 kb on + strand, within Atu0551 at 539.852 kb on + strand at 539.874 kb on + strand at 539.899 kb on - strand at 539.962 kb on + strand at 540.037 kb on + strand, within Atu0552 at 540.059 kb on + strand, within Atu0552 at 540.243 kb on - strand, within Atu0552 at 540.265 kb on - strand, within Atu0552 at 540.369 kb on + strand, within Atu0552 at 540.411 kb on - strand, within Atu0552 at 540.411 kb on - strand, within Atu0552 at 540.417 kb on + strand, within Atu0552 at 540.461 kb on + strand, within Atu0552 at 540.467 kb on - strand, within Atu0552 at 540.541 kb on + strand, within Atu0552 at 540.583 kb on + strand, within Atu0552 at 540.617 kb on + strand, within Atu0552 at 540.617 kb on + strand, within Atu0552 at 540.625 kb on - strand, within Atu0552 at 540.648 kb on + strand at 540.698 kb on + strand at 540.722 kb on + strand at 540.724 kb on - strand at 540.744 kb on + strand at 540.744 kb on + strand at 540.865 kb on - strand, within Atu0553 at 540.938 kb on + strand, within Atu0553 at 540.942 kb on - strand, within Atu0553 at 540.951 kb on + strand, within Atu0553 at 540.964 kb on - strand, within Atu0553 at 540.972 kb on - strand, within Atu0553 at 540.994 kb on - strand, within Atu0553 at 541.037 kb on - strand at 541.119 kb on + strand, within Atu0554 at 541.300 kb on + strand, within Atu0554 at 541.316 kb on + strand, within Atu0554 at 541.319 kb on - strand, within Atu0554 at 541.347 kb on + strand, within Atu0554 at 541.360 kb on - strand, within Atu0554 at 541.417 kb on + strand, within Atu0554 at 541.423 kb on - strand, within Atu0554 at 541.423 kb on - strand, within Atu0554 at 541.425 kb on - strand, within Atu0554 at 541.487 kb on + strand at 541.519 kb on + strand at 541.536 kb on - strand, within Atu0555 at 541.567 kb on + strand, within Atu0555 at 541.570 kb on - strand, within Atu0555 at 541.691 kb on + strand, within Atu0555 at 541.693 kb on - strand, within Atu0555 at 541.693 kb on - strand, within Atu0555 at 541.699 kb on - strand, within Atu0555 at 541.699 kb on - strand, within Atu0555 at 541.704 kb on - strand, within Atu0555 at 541.728 kb on - strand, within Atu0555 at 541.777 kb on - strand, within Atu0555 at 541.785 kb on - strand, within Atu0555 at 541.895 kb on + strand at 541.917 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_H04 remove 539,758 + Atu0551 0.72 +1.1 539,852 + -1.4 539,874 + +2.2 539,899 - +1.9 539,962 + +2.1 540,037 + Atu0552 0.15 +1.4 540,059 + Atu0552 0.18 +1.2 540,243 - Atu0552 0.41 +0.9 540,265 - Atu0552 0.44 -2.0 540,369 + Atu0552 0.57 +2.8 540,411 - Atu0552 0.63 +1.2 540,411 - Atu0552 0.63 +1.0 540,417 + Atu0552 0.63 +1.6 540,461 + Atu0552 0.69 +1.7 540,467 - Atu0552 0.70 +2.1 540,541 + Atu0552 0.79 +1.4 540,583 + Atu0552 0.84 +1.7 540,617 + Atu0552 0.89 +1.1 540,617 + Atu0552 0.89 +2.2 540,625 - Atu0552 0.90 +2.0 540,648 + -0.3 540,698 + +1.5 540,722 + +2.2 540,724 - +2.0 540,744 + +1.8 540,744 + +2.7 540,865 - Atu0553 0.42 +3.0 540,938 + Atu0553 0.63 +1.7 540,942 - Atu0553 0.64 +1.5 540,951 + Atu0553 0.67 +2.3 540,964 - Atu0553 0.71 +2.0 540,972 - Atu0553 0.73 +1.3 540,994 - Atu0553 0.80 +1.8 541,037 - +1.2 541,119 + Atu0554 0.14 +2.2 541,300 + Atu0554 0.57 +1.5 541,316 + Atu0554 0.61 +1.8 541,319 - Atu0554 0.62 +1.8 541,347 + Atu0554 0.69 +1.9 541,360 - Atu0554 0.72 +1.9 541,417 + Atu0554 0.85 +1.7 541,423 - Atu0554 0.87 +1.4 541,423 - Atu0554 0.87 -1.6 541,425 - Atu0554 0.87 +2.0 541,487 + +2.0 541,519 + +2.1 541,536 - Atu0555 0.14 +0.6 541,567 + Atu0555 0.22 +2.3 541,570 - Atu0555 0.22 +2.7 541,691 + Atu0555 0.53 +2.2 541,693 - Atu0555 0.54 +2.6 541,693 - Atu0555 0.54 +0.9 541,699 - Atu0555 0.55 +2.3 541,699 - Atu0555 0.55 +2.1 541,704 - Atu0555 0.56 +2.1 541,728 - Atu0555 0.63 +1.3 541,777 - Atu0555 0.75 +1.8 541,785 - Atu0555 0.77 +0.9 541,895 + +1.0 541,917 - +1.6
Or see this region's nucleotide sequence