Experiment: AgroPhage_H04
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0390 and Atu0391 are separated by 331 nucleotides Atu0391 and Atu0392 overlap by 4 nucleotides Atu0392 and Atu0393 overlap by 1 nucleotides
Atu0390: Atu0390 - ubiquinone/menaquinone biosynthesis methyltransferase, at 382,964 to 383,776
Atu0390
Atu0391: Atu0391 - ABC transporter, nucleotide binding/ATPase protein, at 384,108 to 385,139
Atu0391
Atu0392: Atu0392 - ABC transporter, membrane spanning protein, at 385,136 to 386,062
Atu0392
Atu0393: Atu0393 - ABC transporter, membrane spanning protein, at 386,062 to 386,883
Atu0393
Position (kb) 384
385
386 Strain fitness (log2 ratio) -2
-1
0
1 at 383.177 kb on - strand, within Atu0390 at 383.178 kb on + strand, within Atu0390 at 383.178 kb on + strand, within Atu0390 at 383.268 kb on - strand, within Atu0390 at 383.268 kb on - strand, within Atu0390 at 383.313 kb on - strand, within Atu0390 at 383.429 kb on + strand, within Atu0390 at 383.751 kb on - strand at 383.771 kb on + strand at 383.771 kb on + strand at 383.779 kb on - strand at 383.867 kb on + strand at 383.867 kb on + strand at 383.867 kb on + strand at 383.867 kb on + strand at 383.867 kb on + strand at 383.867 kb on + strand at 383.867 kb on + strand at 383.869 kb on - strand at 383.875 kb on - strand at 383.875 kb on - strand at 383.875 kb on - strand at 383.875 kb on - strand at 383.875 kb on - strand at 383.931 kb on + strand at 383.939 kb on - strand at 384.125 kb on + strand at 384.134 kb on + strand at 384.177 kb on + strand at 384.459 kb on + strand, within Atu0391 at 384.464 kb on + strand, within Atu0391 at 384.472 kb on - strand, within Atu0391 at 384.492 kb on - strand, within Atu0391 at 384.504 kb on + strand, within Atu0391 at 384.512 kb on - strand, within Atu0391 at 384.551 kb on + strand, within Atu0391 at 384.586 kb on - strand, within Atu0391 at 384.606 kb on + strand, within Atu0391 at 384.614 kb on - strand, within Atu0391 at 384.616 kb on + strand, within Atu0391 at 384.622 kb on + strand, within Atu0391 at 384.622 kb on + strand, within Atu0391 at 384.622 kb on + strand, within Atu0391 at 384.630 kb on - strand, within Atu0391 at 384.639 kb on + strand, within Atu0391 at 384.639 kb on + strand, within Atu0391 at 384.649 kb on + strand, within Atu0391 at 384.651 kb on + strand, within Atu0391 at 384.698 kb on - strand, within Atu0391 at 384.722 kb on + strand, within Atu0391 at 384.746 kb on + strand, within Atu0391 at 384.805 kb on - strand, within Atu0391 at 384.805 kb on - strand, within Atu0391 at 384.873 kb on - strand, within Atu0391 at 384.943 kb on - strand, within Atu0391 at 384.961 kb on + strand, within Atu0391 at 384.972 kb on - strand, within Atu0391 at 385.108 kb on + strand at 385.220 kb on + strand at 385.285 kb on - strand, within Atu0392 at 385.322 kb on - strand, within Atu0392 at 385.396 kb on + strand, within Atu0392 at 385.477 kb on - strand, within Atu0392 at 385.477 kb on - strand, within Atu0392 at 385.565 kb on + strand, within Atu0392 at 385.688 kb on + strand, within Atu0392 at 385.696 kb on - strand, within Atu0392 at 385.703 kb on + strand, within Atu0392 at 385.762 kb on + strand, within Atu0392 at 385.773 kb on - strand, within Atu0392 at 385.825 kb on + strand, within Atu0392 at 385.863 kb on + strand, within Atu0392 at 385.927 kb on + strand, within Atu0392 at 385.934 kb on - strand, within Atu0392 at 386.006 kb on + strand at 386.014 kb on - strand at 386.096 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_H04 remove 383,177 - Atu0390 0.26 +0.2 383,178 + Atu0390 0.26 -0.3 383,178 + Atu0390 0.26 -0.3 383,268 - Atu0390 0.37 +0.4 383,268 - Atu0390 0.37 -1.5 383,313 - Atu0390 0.43 -0.1 383,429 + Atu0390 0.57 -0.6 383,751 - -0.1 383,771 + +0.2 383,771 + +0.0 383,779 - +0.1 383,867 + -0.7 383,867 + +0.8 383,867 + -0.6 383,867 + -0.8 383,867 + -0.1 383,867 + +0.8 383,867 + -0.9 383,869 - +0.1 383,875 - +0.2 383,875 - +0.7 383,875 - +0.3 383,875 - -0.5 383,875 - +1.0 383,931 + -0.9 383,939 - +0.6 384,125 + -0.2 384,134 + +0.4 384,177 + +0.8 384,459 + Atu0391 0.34 -1.7 384,464 + Atu0391 0.34 +0.1 384,472 - Atu0391 0.35 +0.3 384,492 - Atu0391 0.37 +0.8 384,504 + Atu0391 0.38 +0.3 384,512 - Atu0391 0.39 +1.7 384,551 + Atu0391 0.43 -0.3 384,586 - Atu0391 0.46 +0.1 384,606 + Atu0391 0.48 +0.1 384,614 - Atu0391 0.49 +0.5 384,616 + Atu0391 0.49 -0.0 384,622 + Atu0391 0.50 +0.1 384,622 + Atu0391 0.50 +1.2 384,622 + Atu0391 0.50 +0.4 384,630 - Atu0391 0.51 -0.2 384,639 + Atu0391 0.51 +0.3 384,639 + Atu0391 0.51 -0.5 384,649 + Atu0391 0.52 -0.2 384,651 + Atu0391 0.53 +0.1 384,698 - Atu0391 0.57 +0.4 384,722 + Atu0391 0.59 +0.5 384,746 + Atu0391 0.62 +0.8 384,805 - Atu0391 0.68 -0.5 384,805 - Atu0391 0.68 +0.0 384,873 - Atu0391 0.74 -0.2 384,943 - Atu0391 0.81 +0.6 384,961 + Atu0391 0.83 +0.0 384,972 - Atu0391 0.84 -0.5 385,108 + -0.5 385,220 + -0.1 385,285 - Atu0392 0.16 -2.0 385,322 - Atu0392 0.20 +0.1 385,396 + Atu0392 0.28 -0.2 385,477 - Atu0392 0.37 +0.9 385,477 - Atu0392 0.37 +0.2 385,565 + Atu0392 0.46 +0.3 385,688 + Atu0392 0.60 -0.2 385,696 - Atu0392 0.60 -0.9 385,703 + Atu0392 0.61 -0.8 385,762 + Atu0392 0.68 -0.5 385,773 - Atu0392 0.69 +0.3 385,825 + Atu0392 0.74 -0.8 385,863 + Atu0392 0.78 -2.3 385,927 + Atu0392 0.85 -1.8 385,934 - Atu0392 0.86 -2.0 386,006 + +0.5 386,014 - -0.0 386,096 + -0.5
Or see this region's nucleotide sequence