Experiment: AgroPhage_H03
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5169 and Atu5170 overlap by 1 nucleotides Atu5170 and Atu5171 are separated by 14 nucleotides Atu5171 and Atu5172 are separated by 8 nucleotides
Atu5169: Atu5169 - type IV secretion protein AvhB8, at 166,382 to 167,053
Atu5169
Atu5170: Atu5170 - type IV secretion protein AvhB9, at 167,053 to 167,904
Atu5170
Atu5171: Atu5171 - type IV secretion protein AvhB10, at 167,919 to 169,091
Atu5171
Atu5172: Atu5172 - type IV secretion protein AvhB11, at 169,100 to 170,110
Atu5172
Position (kb) 167
168
169
170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 166.983 kb on - strand, within Atu5169 at 167.041 kb on - strand at 167.041 kb on - strand at 167.144 kb on + strand, within Atu5170 at 167.178 kb on - strand, within Atu5170 at 167.371 kb on - strand, within Atu5170 at 167.425 kb on + strand, within Atu5170 at 167.449 kb on + strand, within Atu5170 at 167.472 kb on - strand, within Atu5170 at 167.637 kb on + strand, within Atu5170 at 167.692 kb on - strand, within Atu5170 at 167.784 kb on + strand, within Atu5170 at 167.799 kb on - strand, within Atu5170 at 167.823 kb on - strand at 167.944 kb on + strand at 168.020 kb on - strand at 168.089 kb on + strand, within Atu5171 at 168.276 kb on - strand, within Atu5171 at 168.308 kb on - strand, within Atu5171 at 168.318 kb on - strand, within Atu5171 at 168.318 kb on - strand, within Atu5171 at 168.613 kb on - strand, within Atu5171 at 168.696 kb on - strand, within Atu5171 at 168.741 kb on + strand, within Atu5171 at 168.882 kb on - strand, within Atu5171 at 168.892 kb on - strand, within Atu5171 at 168.949 kb on - strand, within Atu5171 at 168.949 kb on - strand, within Atu5171 at 168.965 kb on - strand, within Atu5171 at 169.003 kb on + strand at 169.077 kb on - strand at 169.138 kb on + strand at 169.165 kb on + strand at 169.319 kb on + strand, within Atu5172 at 169.421 kb on - strand, within Atu5172 at 169.448 kb on - strand, within Atu5172 at 169.454 kb on - strand, within Atu5172 at 169.512 kb on - strand, within Atu5172 at 169.512 kb on - strand, within Atu5172 at 169.519 kb on + strand, within Atu5172 at 169.519 kb on + strand, within Atu5172 at 169.523 kb on + strand, within Atu5172 at 169.527 kb on - strand, within Atu5172 at 169.698 kb on + strand, within Atu5172 at 169.821 kb on + strand, within Atu5172 at 169.903 kb on - strand, within Atu5172 at 169.932 kb on + strand, within Atu5172 at 170.076 kb on - strand at 170.082 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_H03 remove 166,983 - Atu5169 0.89 +2.9 167,041 - -0.5 167,041 - +0.7 167,144 + Atu5170 0.11 -1.7 167,178 - Atu5170 0.15 -0.4 167,371 - Atu5170 0.37 -1.2 167,425 + Atu5170 0.44 +0.4 167,449 + Atu5170 0.46 -0.9 167,472 - Atu5170 0.49 -0.3 167,637 + Atu5170 0.69 -1.1 167,692 - Atu5170 0.75 -1.0 167,784 + Atu5170 0.86 -0.5 167,799 - Atu5170 0.88 -0.6 167,823 - -0.1 167,944 + -0.6 168,020 - -0.1 168,089 + Atu5171 0.14 -2.8 168,276 - Atu5171 0.30 -0.9 168,308 - Atu5171 0.33 -0.9 168,318 - Atu5171 0.34 -0.9 168,318 - Atu5171 0.34 -0.9 168,613 - Atu5171 0.59 -1.7 168,696 - Atu5171 0.66 -1.0 168,741 + Atu5171 0.70 -0.5 168,882 - Atu5171 0.82 +0.8 168,892 - Atu5171 0.83 +0.7 168,949 - Atu5171 0.88 -0.7 168,949 - Atu5171 0.88 +0.1 168,965 - Atu5171 0.89 -0.1 169,003 + +0.4 169,077 - +0.0 169,138 + -1.1 169,165 + +0.5 169,319 + Atu5172 0.22 -0.8 169,421 - Atu5172 0.32 -0.2 169,448 - Atu5172 0.34 +0.1 169,454 - Atu5172 0.35 -0.6 169,512 - Atu5172 0.41 +0.7 169,512 - Atu5172 0.41 +0.4 169,519 + Atu5172 0.41 -0.6 169,519 + Atu5172 0.41 +0.5 169,523 + Atu5172 0.42 -0.2 169,527 - Atu5172 0.42 -0.1 169,698 + Atu5172 0.59 -0.9 169,821 + Atu5172 0.71 -0.7 169,903 - Atu5172 0.79 -0.1 169,932 + Atu5172 0.82 +0.6 170,076 - -0.5 170,082 - -1.1
Or see this region's nucleotide sequence