Experiment: AgroPhage_H03
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3044 and Atu3045 are separated by 65 nucleotides Atu3045 and Atu3046 are separated by 66 nucleotides Atu3046 and Atu3047 are separated by 11 nucleotides Atu3047 and Atu3048 are separated by 41 nucleotides
Atu3044: Atu3044 - asparaginase, at 40,726 to 41,670
Atu3044
Atu3045: Atu3045 - hypothetical protein, at 41,736 to 42,083
Atu3045
Atu3046: Atu3046 - oxidoreductase, at 42,150 to 43,475
Atu3046
Atu3047: Atu3047 - oligopeptide ABC transporter permease, at 43,487 to 44,377
Atu3047
Atu3048: Atu3048 - oligopeptide ABC transporter permease, at 44,419 to 45,369
Atu3048
Position (kb) 42
43
44 Strain fitness (log2 ratio) -2
-1
0
1
2 at 41.238 kb on + strand, within Atu3044 at 41.531 kb on + strand, within Atu3044 at 41.539 kb on - strand, within Atu3044 at 41.554 kb on - strand, within Atu3044 at 41.572 kb on + strand, within Atu3044 at 41.577 kb on + strand at 41.577 kb on + strand at 41.583 kb on - strand at 41.590 kb on + strand at 41.643 kb on + strand at 41.742 kb on - strand at 41.791 kb on - strand, within Atu3045 at 41.793 kb on + strand, within Atu3045 at 41.801 kb on - strand, within Atu3045 at 41.803 kb on + strand, within Atu3045 at 41.811 kb on - strand, within Atu3045 at 42.108 kb on - strand at 42.108 kb on - strand at 42.261 kb on + strand at 42.380 kb on - strand, within Atu3046 at 42.406 kb on - strand, within Atu3046 at 42.446 kb on + strand, within Atu3046 at 42.454 kb on - strand, within Atu3046 at 42.508 kb on + strand, within Atu3046 at 42.529 kb on + strand, within Atu3046 at 42.650 kb on - strand, within Atu3046 at 42.724 kb on + strand, within Atu3046 at 42.724 kb on + strand, within Atu3046 at 42.732 kb on - strand, within Atu3046 at 42.745 kb on + strand, within Atu3046 at 42.765 kb on + strand, within Atu3046 at 42.770 kb on + strand, within Atu3046 at 42.784 kb on + strand, within Atu3046 at 42.794 kb on + strand, within Atu3046 at 42.807 kb on - strand, within Atu3046 at 42.816 kb on + strand, within Atu3046 at 42.921 kb on + strand, within Atu3046 at 42.989 kb on + strand, within Atu3046 at 42.997 kb on - strand, within Atu3046 at 43.032 kb on - strand, within Atu3046 at 43.066 kb on + strand, within Atu3046 at 43.068 kb on + strand, within Atu3046 at 43.068 kb on + strand, within Atu3046 at 43.074 kb on - strand, within Atu3046 at 43.088 kb on - strand, within Atu3046 at 43.095 kb on + strand, within Atu3046 at 43.095 kb on + strand, within Atu3046 at 43.186 kb on + strand, within Atu3046 at 43.331 kb on + strand, within Atu3046 at 43.331 kb on + strand, within Atu3046 at 43.331 kb on + strand, within Atu3046 at 43.344 kb on + strand at 43.352 kb on - strand at 43.352 kb on - strand at 43.352 kb on - strand at 43.352 kb on - strand at 43.361 kb on - strand at 43.362 kb on - strand at 43.378 kb on - strand at 43.384 kb on + strand at 43.384 kb on + strand at 43.392 kb on - strand at 43.540 kb on + strand at 43.600 kb on - strand, within Atu3047 at 43.608 kb on + strand, within Atu3047 at 43.895 kb on - strand, within Atu3047 at 43.895 kb on - strand, within Atu3047 at 43.912 kb on + strand, within Atu3047 at 43.996 kb on - strand, within Atu3047 at 44.013 kb on + strand, within Atu3047 at 44.013 kb on + strand, within Atu3047 at 44.013 kb on + strand, within Atu3047 at 44.103 kb on + strand, within Atu3047 at 44.103 kb on + strand, within Atu3047 at 44.140 kb on + strand, within Atu3047 at 44.148 kb on - strand, within Atu3047 at 44.423 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_H03 remove 41,238 + Atu3044 0.54 +0.3 41,531 + Atu3044 0.85 -0.8 41,539 - Atu3044 0.86 +0.1 41,554 - Atu3044 0.88 +1.1 41,572 + Atu3044 0.90 -1.0 41,577 + +1.3 41,577 + -0.5 41,583 - +2.0 41,590 + +0.4 41,643 + -0.3 41,742 - -0.2 41,791 - Atu3045 0.16 +0.5 41,793 + Atu3045 0.16 +0.6 41,801 - Atu3045 0.19 +0.7 41,803 + Atu3045 0.19 +0.3 41,811 - Atu3045 0.22 +0.3 42,108 - -0.8 42,108 - +1.2 42,261 + -0.5 42,380 - Atu3046 0.17 +0.7 42,406 - Atu3046 0.19 -0.1 42,446 + Atu3046 0.22 -0.6 42,454 - Atu3046 0.23 -0.2 42,508 + Atu3046 0.27 -1.7 42,529 + Atu3046 0.29 +0.5 42,650 - Atu3046 0.38 -0.0 42,724 + Atu3046 0.43 +0.2 42,724 + Atu3046 0.43 +0.4 42,732 - Atu3046 0.44 -0.0 42,745 + Atu3046 0.45 +0.4 42,765 + Atu3046 0.46 +1.1 42,770 + Atu3046 0.47 +0.7 42,784 + Atu3046 0.48 -0.1 42,794 + Atu3046 0.49 +0.3 42,807 - Atu3046 0.50 +0.4 42,816 + Atu3046 0.50 +0.4 42,921 + Atu3046 0.58 +0.1 42,989 + Atu3046 0.63 +0.2 42,997 - Atu3046 0.64 +0.7 43,032 - Atu3046 0.67 +0.0 43,066 + Atu3046 0.69 -0.6 43,068 + Atu3046 0.69 -1.2 43,068 + Atu3046 0.69 +0.3 43,074 - Atu3046 0.70 +0.2 43,088 - Atu3046 0.71 -1.1 43,095 + Atu3046 0.71 -1.8 43,095 + Atu3046 0.71 +0.3 43,186 + Atu3046 0.78 +2.6 43,331 + Atu3046 0.89 -0.1 43,331 + Atu3046 0.89 +0.2 43,331 + Atu3046 0.89 -0.1 43,344 + +0.0 43,352 - -0.2 43,352 - +0.3 43,352 - +1.0 43,352 - +0.2 43,361 - -0.1 43,362 - +0.1 43,378 - +0.2 43,384 + +1.3 43,384 + +0.9 43,392 - +0.4 43,540 + -0.5 43,600 - Atu3047 0.13 +0.2 43,608 + Atu3047 0.14 -0.5 43,895 - Atu3047 0.46 +0.3 43,895 - Atu3047 0.46 +0.6 43,912 + Atu3047 0.48 -1.6 43,996 - Atu3047 0.57 +1.3 44,013 + Atu3047 0.59 +1.1 44,013 + Atu3047 0.59 +0.2 44,013 + Atu3047 0.59 +1.9 44,103 + Atu3047 0.69 -0.9 44,103 + Atu3047 0.69 +0.3 44,140 + Atu3047 0.73 +0.6 44,148 - Atu3047 0.74 +0.7 44,423 - -0.1
Or see this region's nucleotide sequence