Experiment: AgroPhage_F10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5485 and Atu5486 are separated by 31 nucleotides Atu5486 and Atu5487 are separated by 63 nucleotides Atu5487 and Atu5488 are separated by 13 nucleotides Atu5488 and Atu5489 are separated by 141 nucleotides
Atu5485: Atu5485 - hypothetical protein, at 477,090 to 477,392
Atu5485
Atu5486: Atu5486 - hypothetical protein, at 477,424 to 477,768
Atu5486
Atu5487: Atu5487 - hypothetical protein, at 477,832 to 478,152
Atu5487
Atu5488: Atu5488 - hypothetical protein, at 478,166 to 478,930
Atu5488
Atu5489: Atu5489 - hypothetical protein, at 479,072 to 479,299
Atu5489
Position (kb) 477
478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 476.845 kb on + strand at 476.858 kb on - strand at 476.860 kb on - strand at 476.871 kb on + strand at 476.879 kb on - strand at 476.953 kb on + strand at 476.965 kb on + strand at 476.966 kb on - strand at 476.975 kb on + strand at 476.999 kb on + strand at 477.010 kb on + strand at 477.018 kb on - strand at 477.018 kb on - strand at 477.062 kb on - strand at 477.113 kb on + strand at 477.139 kb on + strand, within Atu5485 at 477.255 kb on - strand, within Atu5485 at 477.272 kb on - strand, within Atu5485 at 477.289 kb on + strand, within Atu5485 at 477.289 kb on + strand, within Atu5485 at 477.421 kb on + strand at 477.426 kb on + strand at 477.457 kb on - strand at 477.457 kb on - strand at 477.529 kb on + strand, within Atu5486 at 477.640 kb on + strand, within Atu5486 at 477.640 kb on + strand, within Atu5486 at 477.657 kb on + strand, within Atu5486 at 477.669 kb on + strand, within Atu5486 at 477.748 kb on + strand at 477.834 kb on + strand at 477.835 kb on + strand at 477.842 kb on + strand at 477.848 kb on - strand at 477.855 kb on + strand at 477.855 kb on + strand at 477.855 kb on + strand at 477.863 kb on - strand at 477.863 kb on - strand at 477.863 kb on - strand at 477.863 kb on - strand at 477.863 kb on - strand at 477.863 kb on - strand at 477.863 kb on - strand at 477.865 kb on + strand, within Atu5487 at 477.872 kb on - strand, within Atu5487 at 477.987 kb on + strand, within Atu5487 at 478.000 kb on - strand, within Atu5487 at 478.048 kb on + strand, within Atu5487 at 478.069 kb on + strand, within Atu5487 at 478.078 kb on - strand, within Atu5487 at 478.139 kb on - strand at 478.238 kb on + strand at 478.306 kb on - strand, within Atu5488 at 478.377 kb on - strand, within Atu5488 at 478.429 kb on - strand, within Atu5488 at 478.455 kb on - strand, within Atu5488 at 478.467 kb on - strand, within Atu5488 at 478.513 kb on - strand, within Atu5488 at 478.546 kb on + strand, within Atu5488 at 478.551 kb on + strand, within Atu5488 at 478.556 kb on + strand, within Atu5488 at 478.556 kb on + strand, within Atu5488 at 478.556 kb on + strand, within Atu5488 at 478.564 kb on - strand, within Atu5488 at 478.564 kb on - strand, within Atu5488 at 478.564 kb on - strand, within Atu5488 at 478.564 kb on - strand, within Atu5488 at 478.609 kb on + strand, within Atu5488 at 478.609 kb on + strand, within Atu5488 at 478.611 kb on + strand, within Atu5488 at 478.611 kb on + strand, within Atu5488 at 478.617 kb on - strand, within Atu5488 at 478.617 kb on - strand, within Atu5488 at 478.617 kb on - strand, within Atu5488 at 478.617 kb on - strand, within Atu5488 at 478.617 kb on - strand, within Atu5488 at 478.622 kb on + strand, within Atu5488 at 478.653 kb on + strand, within Atu5488 at 478.676 kb on + strand, within Atu5488 at 478.736 kb on + strand, within Atu5488 at 478.761 kb on + strand, within Atu5488 at 478.769 kb on - strand, within Atu5488 at 478.809 kb on - strand, within Atu5488 at 478.870 kb on + strand at 478.940 kb on + strand at 478.940 kb on + strand at 478.940 kb on + strand at 478.940 kb on + strand at 478.948 kb on - strand at 478.948 kb on - strand at 478.989 kb on + strand at 479.066 kb on + strand at 479.122 kb on + strand, within Atu5489 at 479.139 kb on - strand, within Atu5489 at 479.151 kb on + strand, within Atu5489
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F10 remove 476,845 + +0.1 476,858 - -1.1 476,860 - -0.9 476,871 + +0.5 476,879 - +0.9 476,953 + -0.4 476,965 + -1.5 476,966 - +0.5 476,975 + -1.0 476,999 + -0.2 477,010 + +1.7 477,018 - -1.9 477,018 - +0.7 477,062 - -1.4 477,113 + +0.6 477,139 + Atu5485 0.16 +0.2 477,255 - Atu5485 0.54 -1.3 477,272 - Atu5485 0.60 +1.2 477,289 + Atu5485 0.66 +1.0 477,289 + Atu5485 0.66 -1.2 477,421 + +1.1 477,426 + -0.2 477,457 - +0.8 477,457 - +0.7 477,529 + Atu5486 0.30 -1.3 477,640 + Atu5486 0.63 -0.1 477,640 + Atu5486 0.63 -1.7 477,657 + Atu5486 0.68 -3.4 477,669 + Atu5486 0.71 -0.4 477,748 + -1.3 477,834 + -0.1 477,835 + +1.9 477,842 + +2.7 477,848 - +0.4 477,855 + -0.9 477,855 + -2.0 477,855 + -1.5 477,863 - +1.9 477,863 - +1.0 477,863 - -0.5 477,863 - -1.4 477,863 - +2.3 477,863 - -0.0 477,863 - +0.9 477,865 + Atu5487 0.10 +0.9 477,872 - Atu5487 0.12 +0.8 477,987 + Atu5487 0.48 -0.1 478,000 - Atu5487 0.52 +1.1 478,048 + Atu5487 0.67 +0.7 478,069 + Atu5487 0.74 -0.2 478,078 - Atu5487 0.77 +0.7 478,139 - +2.6 478,238 + +0.2 478,306 - Atu5488 0.18 -0.6 478,377 - Atu5488 0.28 -1.2 478,429 - Atu5488 0.34 -0.8 478,455 - Atu5488 0.38 +1.2 478,467 - Atu5488 0.39 +1.2 478,513 - Atu5488 0.45 +0.1 478,546 + Atu5488 0.50 +2.1 478,551 + Atu5488 0.50 +0.3 478,556 + Atu5488 0.51 -0.3 478,556 + Atu5488 0.51 -0.6 478,556 + Atu5488 0.51 -0.3 478,564 - Atu5488 0.52 +0.1 478,564 - Atu5488 0.52 -0.3 478,564 - Atu5488 0.52 -1.0 478,564 - Atu5488 0.52 -1.4 478,609 + Atu5488 0.58 +0.2 478,609 + Atu5488 0.58 -0.9 478,611 + Atu5488 0.58 +2.7 478,611 + Atu5488 0.58 -0.5 478,617 - Atu5488 0.59 -0.1 478,617 - Atu5488 0.59 -0.8 478,617 - Atu5488 0.59 +0.9 478,617 - Atu5488 0.59 +0.5 478,617 - Atu5488 0.59 -1.1 478,622 + Atu5488 0.60 +0.1 478,653 + Atu5488 0.64 +1.3 478,676 + Atu5488 0.67 +0.2 478,736 + Atu5488 0.75 +0.5 478,761 + Atu5488 0.78 +0.2 478,769 - Atu5488 0.79 -2.4 478,809 - Atu5488 0.84 -1.2 478,870 + -2.1 478,940 + -0.8 478,940 + -1.1 478,940 + -0.4 478,940 + +1.1 478,948 - +0.6 478,948 - -0.4 478,989 + +0.4 479,066 + +3.0 479,122 + Atu5489 0.22 +3.7 479,139 - Atu5489 0.29 -0.3 479,151 + Atu5489 0.35 +0.0
Or see this region's nucleotide sequence