Experiment: AgroPhage_F10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5411 and Atu5412 are separated by 9 nucleotides Atu5412 and Atu5413 overlap by 8 nucleotides Atu5413 and Atu5414 are separated by 31 nucleotides
Atu5411: Atu5411 - ABC transporter substrate binding protein, at 406,432 to 407,472
Atu5411
Atu5412: Atu5412 - ABC transporter membrane spanning protein, at 407,482 to 408,309
Atu5412
Atu5413: Atu5413 - ABC transporter membrane spanning protein, at 408,302 to 409,123
Atu5413
Atu5414: Atu5414 - Xaa-Pro dipeptidase, at 409,155 to 410,579
Atu5414
Position (kb) 408
409
410 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 407.380 kb on + strand at 407.416 kb on - strand at 407.467 kb on + strand at 407.472 kb on + strand at 407.480 kb on - strand at 407.575 kb on - strand, within Atu5412 at 407.581 kb on - strand, within Atu5412 at 407.591 kb on + strand, within Atu5412 at 407.657 kb on + strand, within Atu5412 at 407.657 kb on - strand, within Atu5412 at 407.665 kb on - strand, within Atu5412 at 407.679 kb on - strand, within Atu5412 at 407.692 kb on + strand, within Atu5412 at 407.702 kb on + strand, within Atu5412 at 407.726 kb on - strand, within Atu5412 at 407.726 kb on - strand, within Atu5412 at 407.840 kb on - strand, within Atu5412 at 407.862 kb on - strand, within Atu5412 at 407.871 kb on + strand, within Atu5412 at 407.983 kb on + strand, within Atu5412 at 408.002 kb on - strand, within Atu5412 at 408.056 kb on - strand, within Atu5412 at 408.069 kb on - strand, within Atu5412 at 408.073 kb on - strand, within Atu5412 at 408.088 kb on + strand, within Atu5412 at 408.224 kb on + strand, within Atu5412 at 408.232 kb on - strand at 408.232 kb on - strand at 408.232 kb on - strand at 408.340 kb on + strand at 408.369 kb on + strand at 408.369 kb on + strand at 408.374 kb on + strand at 408.377 kb on - strand at 408.377 kb on - strand at 408.377 kb on - strand at 408.377 kb on - strand at 408.429 kb on - strand, within Atu5413 at 408.482 kb on - strand, within Atu5413 at 408.489 kb on - strand, within Atu5413 at 408.494 kb on + strand, within Atu5413 at 408.579 kb on - strand, within Atu5413 at 408.590 kb on + strand, within Atu5413 at 408.598 kb on - strand, within Atu5413 at 408.604 kb on - strand, within Atu5413 at 408.630 kb on - strand, within Atu5413 at 408.735 kb on - strand, within Atu5413 at 408.747 kb on + strand, within Atu5413 at 408.778 kb on - strand, within Atu5413 at 408.778 kb on - strand, within Atu5413 at 408.846 kb on - strand, within Atu5413 at 408.846 kb on - strand, within Atu5413 at 408.855 kb on + strand, within Atu5413 at 408.858 kb on + strand, within Atu5413 at 408.883 kb on - strand, within Atu5413 at 408.973 kb on + strand, within Atu5413 at 408.984 kb on - strand, within Atu5413 at 409.145 kb on + strand at 409.172 kb on - strand at 409.174 kb on + strand at 409.280 kb on - strand at 409.289 kb on + strand at 409.357 kb on + strand, within Atu5414 at 409.440 kb on - strand, within Atu5414 at 409.441 kb on - strand, within Atu5414 at 409.461 kb on - strand, within Atu5414 at 409.461 kb on - strand, within Atu5414 at 409.463 kb on + strand, within Atu5414 at 409.516 kb on + strand, within Atu5414 at 409.543 kb on - strand, within Atu5414 at 409.598 kb on - strand, within Atu5414 at 409.620 kb on + strand, within Atu5414 at 409.638 kb on + strand, within Atu5414 at 409.676 kb on - strand, within Atu5414 at 409.677 kb on - strand, within Atu5414 at 409.800 kb on - strand, within Atu5414 at 409.806 kb on + strand, within Atu5414 at 409.854 kb on + strand, within Atu5414 at 409.854 kb on + strand, within Atu5414 at 409.951 kb on - strand, within Atu5414 at 409.989 kb on - strand, within Atu5414 at 410.005 kb on + strand, within Atu5414 at 410.009 kb on + strand, within Atu5414 at 410.103 kb on - strand, within Atu5414
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F10 remove 407,380 + +2.1 407,416 - -0.1 407,467 + +0.7 407,472 + +0.5 407,480 - +2.0 407,575 - Atu5412 0.11 +1.1 407,581 - Atu5412 0.12 +0.5 407,591 + Atu5412 0.13 +0.2 407,657 + Atu5412 0.21 -0.2 407,657 - Atu5412 0.21 -0.5 407,665 - Atu5412 0.22 +0.2 407,679 - Atu5412 0.24 +0.9 407,692 + Atu5412 0.25 +0.2 407,702 + Atu5412 0.27 +0.0 407,726 - Atu5412 0.29 -1.0 407,726 - Atu5412 0.29 -0.5 407,840 - Atu5412 0.43 -0.8 407,862 - Atu5412 0.46 -0.6 407,871 + Atu5412 0.47 +0.6 407,983 + Atu5412 0.61 -1.9 408,002 - Atu5412 0.63 +1.8 408,056 - Atu5412 0.69 -0.5 408,069 - Atu5412 0.71 -0.9 408,073 - Atu5412 0.71 +1.0 408,088 + Atu5412 0.73 +0.2 408,224 + Atu5412 0.90 -0.1 408,232 - +0.2 408,232 - +0.0 408,232 - +0.0 408,340 + -1.5 408,369 + +0.0 408,369 + -0.0 408,374 + +1.5 408,377 - +0.6 408,377 - -1.0 408,377 - -1.1 408,377 - +1.3 408,429 - Atu5413 0.15 +0.5 408,482 - Atu5413 0.22 -1.0 408,489 - Atu5413 0.23 -0.1 408,494 + Atu5413 0.23 +0.5 408,579 - Atu5413 0.34 -1.2 408,590 + Atu5413 0.35 +0.3 408,598 - Atu5413 0.36 +0.0 408,604 - Atu5413 0.37 +0.3 408,630 - Atu5413 0.40 +1.2 408,735 - Atu5413 0.53 +1.4 408,747 + Atu5413 0.54 +0.4 408,778 - Atu5413 0.58 +0.5 408,778 - Atu5413 0.58 -1.8 408,846 - Atu5413 0.66 +0.1 408,846 - Atu5413 0.66 +1.9 408,855 + Atu5413 0.67 +2.0 408,858 + Atu5413 0.68 +1.5 408,883 - Atu5413 0.71 -0.1 408,973 + Atu5413 0.82 +2.1 408,984 - Atu5413 0.83 -0.5 409,145 + -0.7 409,172 - -0.9 409,174 + -0.6 409,280 - +0.7 409,289 + -0.2 409,357 + Atu5414 0.14 +1.1 409,440 - Atu5414 0.20 +0.8 409,441 - Atu5414 0.20 -2.8 409,461 - Atu5414 0.21 -1.0 409,461 - Atu5414 0.21 +1.0 409,463 + Atu5414 0.22 -0.4 409,516 + Atu5414 0.25 -0.9 409,543 - Atu5414 0.27 -1.8 409,598 - Atu5414 0.31 +1.7 409,620 + Atu5414 0.33 -1.7 409,638 + Atu5414 0.34 -1.0 409,676 - Atu5414 0.37 -0.9 409,677 - Atu5414 0.37 -1.3 409,800 - Atu5414 0.45 +2.4 409,806 + Atu5414 0.46 +0.5 409,854 + Atu5414 0.49 -2.2 409,854 + Atu5414 0.49 -0.1 409,951 - Atu5414 0.56 +0.2 409,989 - Atu5414 0.59 -0.8 410,005 + Atu5414 0.60 +0.3 410,009 + Atu5414 0.60 +2.1 410,103 - Atu5414 0.67 -0.8
Or see this region's nucleotide sequence