Experiment: AgroPhage_F10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3744 and Atu3745 are separated by 102 nucleotides Atu3745 and Atu3746 are separated by 88 nucleotides
Atu3744: Atu3744 - ABC transporter permease, at 826,179 to 827,978
Atu3744
Atu3745: Atu3745 - FAD-binding dehydrogenase, at 828,081 to 829,724
Atu3745
Atu3746: Atu3746 - hypothetical protein, at 829,813 to 830,598
Atu3746
Position (kb) 828
829
830 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 827.110 kb on - strand, within Atu3744 at 827.293 kb on + strand, within Atu3744 at 827.301 kb on - strand, within Atu3744 at 827.459 kb on + strand, within Atu3744 at 827.467 kb on - strand, within Atu3744 at 827.467 kb on - strand, within Atu3744 at 827.549 kb on - strand, within Atu3744 at 827.643 kb on - strand, within Atu3744 at 827.661 kb on - strand, within Atu3744 at 827.828 kb on + strand at 827.894 kb on - strand at 827.980 kb on - strand at 827.980 kb on - strand at 828.084 kb on + strand at 828.087 kb on - strand at 828.162 kb on - strand at 828.254 kb on - strand, within Atu3745 at 828.274 kb on - strand, within Atu3745 at 828.486 kb on - strand, within Atu3745 at 828.496 kb on - strand, within Atu3745 at 828.524 kb on + strand, within Atu3745 at 828.655 kb on + strand, within Atu3745 at 828.663 kb on - strand, within Atu3745 at 828.663 kb on - strand, within Atu3745 at 828.688 kb on + strand, within Atu3745 at 828.883 kb on + strand, within Atu3745 at 828.914 kb on + strand, within Atu3745 at 829.106 kb on + strand, within Atu3745 at 829.139 kb on + strand, within Atu3745 at 829.288 kb on + strand, within Atu3745 at 829.312 kb on - strand, within Atu3745 at 829.398 kb on + strand, within Atu3745 at 829.447 kb on + strand, within Atu3745 at 829.447 kb on + strand, within Atu3745 at 829.449 kb on - strand, within Atu3745 at 829.459 kb on + strand, within Atu3745 at 829.493 kb on + strand, within Atu3745 at 829.525 kb on - strand, within Atu3745 at 829.633 kb on + strand at 829.860 kb on + strand at 829.868 kb on - strand at 830.025 kb on - strand, within Atu3746 at 830.239 kb on - strand, within Atu3746 at 830.331 kb on + strand, within Atu3746 at 830.339 kb on + strand, within Atu3746 at 830.692 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F10 remove 827,110 - Atu3744 0.52 +0.0 827,293 + Atu3744 0.62 +0.7 827,301 - Atu3744 0.62 +0.3 827,459 + Atu3744 0.71 -1.7 827,467 - Atu3744 0.72 +0.7 827,467 - Atu3744 0.72 +1.0 827,549 - Atu3744 0.76 -0.8 827,643 - Atu3744 0.81 -0.5 827,661 - Atu3744 0.82 +1.5 827,828 + -1.1 827,894 - -1.5 827,980 - +0.7 827,980 - +0.4 828,084 + +0.9 828,087 - -0.7 828,162 - +0.9 828,254 - Atu3745 0.11 +0.5 828,274 - Atu3745 0.12 -0.6 828,486 - Atu3745 0.25 -2.8 828,496 - Atu3745 0.25 -0.6 828,524 + Atu3745 0.27 -2.4 828,655 + Atu3745 0.35 -0.1 828,663 - Atu3745 0.35 +1.8 828,663 - Atu3745 0.35 +2.1 828,688 + Atu3745 0.37 +0.1 828,883 + Atu3745 0.49 +1.1 828,914 + Atu3745 0.51 +1.7 829,106 + Atu3745 0.62 +0.3 829,139 + Atu3745 0.64 -0.1 829,288 + Atu3745 0.73 +0.4 829,312 - Atu3745 0.75 +1.2 829,398 + Atu3745 0.80 +0.2 829,447 + Atu3745 0.83 +0.1 829,447 + Atu3745 0.83 +3.6 829,449 - Atu3745 0.83 -0.8 829,459 + Atu3745 0.84 +1.0 829,493 + Atu3745 0.86 +0.2 829,525 - Atu3745 0.88 -0.2 829,633 + +0.6 829,860 + +0.0 829,868 - -0.5 830,025 - Atu3746 0.27 +0.8 830,239 - Atu3746 0.54 -0.3 830,331 + Atu3746 0.66 +0.7 830,339 + Atu3746 0.67 +1.6 830,692 - -0.7
Or see this region's nucleotide sequence