Experiment: AgroPhage_F10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3538 and Atu3539 are separated by 30 nucleotides Atu3539 and Atu3540 are separated by 50 nucleotides Atu3540 and Atu3541 are separated by 80 nucleotides Atu3541 and Atu3542 are separated by 119 nucleotides
Atu3538: Atu3538 - hypothetical protein, at 587,569 to 588,084
Atu3538
Atu3539: Atu3539 - hypothetical protein, at 588,115 to 588,672
Atu3539
Atu3540: Atu3540 - hypothetical protein, at 588,723 to 589,361
Atu3540
Atu3541: Atu3541 - hypothetical protein, at 589,442 to 590,044
Atu3541
Atu3542: Atu3542 - serine/threonine protein phosphatase I, at 590,164 to 590,955
Atu3542
Position (kb) 588
589
590 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 588.104 kb on + strand at 588.118 kb on + strand at 588.191 kb on + strand, within Atu3539 at 588.361 kb on + strand, within Atu3539 at 588.380 kb on + strand, within Atu3539 at 588.380 kb on + strand, within Atu3539 at 588.456 kb on - strand, within Atu3539 at 588.461 kb on - strand, within Atu3539 at 588.547 kb on + strand, within Atu3539 at 588.570 kb on + strand, within Atu3539 at 588.619 kb on - strand at 588.619 kb on - strand at 588.619 kb on - strand at 588.621 kb on - strand at 588.621 kb on - strand at 588.797 kb on + strand, within Atu3540 at 588.797 kb on + strand, within Atu3540 at 588.799 kb on + strand, within Atu3540 at 588.807 kb on - strand, within Atu3540 at 588.807 kb on - strand, within Atu3540 at 588.832 kb on + strand, within Atu3540 at 588.835 kb on - strand, within Atu3540 at 588.840 kb on - strand, within Atu3540 at 588.847 kb on + strand, within Atu3540 at 589.044 kb on - strand, within Atu3540 at 589.069 kb on + strand, within Atu3540 at 589.069 kb on + strand, within Atu3540 at 589.162 kb on + strand, within Atu3540 at 589.219 kb on - strand, within Atu3540 at 589.228 kb on + strand, within Atu3540 at 589.228 kb on + strand, within Atu3540 at 589.236 kb on - strand, within Atu3540 at 589.243 kb on + strand, within Atu3540 at 589.263 kb on - strand, within Atu3540 at 589.266 kb on - strand, within Atu3540 at 589.309 kb on - strand at 589.395 kb on + strand at 589.700 kb on + strand, within Atu3541 at 589.723 kb on + strand, within Atu3541 at 589.759 kb on - strand, within Atu3541 at 589.770 kb on + strand, within Atu3541 at 589.877 kb on - strand, within Atu3541 at 589.938 kb on - strand, within Atu3541 at 590.009 kb on - strand at 590.081 kb on + strand at 590.089 kb on - strand at 590.095 kb on - strand at 590.104 kb on + strand at 590.112 kb on - strand at 590.126 kb on + strand at 590.127 kb on + strand at 590.127 kb on + strand at 590.135 kb on - strand at 590.173 kb on + strand at 590.229 kb on + strand at 590.234 kb on + strand at 590.234 kb on + strand at 590.234 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F10 remove 588,104 + +0.4 588,118 + -0.2 588,191 + Atu3539 0.14 +0.8 588,361 + Atu3539 0.44 -3.6 588,380 + Atu3539 0.47 +0.4 588,380 + Atu3539 0.47 -0.9 588,456 - Atu3539 0.61 -1.7 588,461 - Atu3539 0.62 +2.7 588,547 + Atu3539 0.77 +0.3 588,570 + Atu3539 0.82 +0.0 588,619 - -0.9 588,619 - +0.2 588,619 - +0.5 588,621 - -1.9 588,621 - -0.3 588,797 + Atu3540 0.12 +0.2 588,797 + Atu3540 0.12 -2.6 588,799 + Atu3540 0.12 -0.7 588,807 - Atu3540 0.13 -1.7 588,807 - Atu3540 0.13 -1.1 588,832 + Atu3540 0.17 +0.9 588,835 - Atu3540 0.18 -1.1 588,840 - Atu3540 0.18 +1.1 588,847 + Atu3540 0.19 +1.2 589,044 - Atu3540 0.50 +2.6 589,069 + Atu3540 0.54 -2.1 589,069 + Atu3540 0.54 +0.3 589,162 + Atu3540 0.69 +0.6 589,219 - Atu3540 0.78 +0.2 589,228 + Atu3540 0.79 -1.3 589,228 + Atu3540 0.79 -0.2 589,236 - Atu3540 0.80 -1.4 589,243 + Atu3540 0.81 +2.6 589,263 - Atu3540 0.85 -0.7 589,266 - Atu3540 0.85 +0.1 589,309 - +0.7 589,395 + +0.5 589,700 + Atu3541 0.43 +0.5 589,723 + Atu3541 0.47 -1.0 589,759 - Atu3541 0.53 -1.0 589,770 + Atu3541 0.54 +0.1 589,877 - Atu3541 0.72 +0.9 589,938 - Atu3541 0.82 +0.5 590,009 - -1.3 590,081 + +0.4 590,089 - +0.2 590,095 - -1.6 590,104 + -0.3 590,112 - +0.4 590,126 + -0.1 590,127 + +1.6 590,127 + -1.1 590,135 - +0.9 590,173 + +2.2 590,229 + -1.5 590,234 + +4.5 590,234 + +2.5 590,234 + +3.4
Or see this region's nucleotide sequence