Experiment: AgroPhage_F10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3509 and Atu3510 overlap by 4 nucleotides Atu3510 and Atu3511 are separated by 24 nucleotides Atu3511 and Atu3512 are separated by 12 nucleotides Atu3512 and Atu3513 are separated by 142 nucleotides
Atu3509: Atu3509 - hypothetical protein, at 559,377 to 559,805
Atu3509
Atu3510: Atu3510 - amidohydrolase, at 559,802 to 560,662
Atu3510
Atu3511: Atu3511 - glutaredoxin, at 560,687 to 560,989
Atu3511
Atu3512: Atu3512 - competence protein F, at 561,002 to 561,793
Atu3512
Atu3513: Atu3513 - methyltransferase, at 561,936 to 562,817
Atu3513
Position (kb) 560
561 Strain fitness (log2 ratio) -1
0
1
2
3 at 559.824 kb on + strand at 559.852 kb on - strand at 559.966 kb on - strand, within Atu3510 at 560.136 kb on + strand, within Atu3510 at 560.144 kb on - strand, within Atu3510 at 560.320 kb on - strand, within Atu3510 at 560.508 kb on + strand, within Atu3510 at 560.650 kb on + strand at 560.658 kb on + strand at 560.672 kb on + strand at 560.679 kb on - strand at 560.758 kb on - strand, within Atu3511 at 560.774 kb on + strand, within Atu3511 at 560.876 kb on + strand, within Atu3511 at 560.945 kb on + strand, within Atu3511 at 560.953 kb on - strand, within Atu3511 at 561.040 kb on - strand at 561.188 kb on - strand, within Atu3512 at 561.291 kb on - strand, within Atu3512 at 561.296 kb on + strand, within Atu3512 at 561.371 kb on - strand, within Atu3512 at 561.382 kb on - strand, within Atu3512 at 561.433 kb on - strand, within Atu3512 at 561.509 kb on + strand, within Atu3512 at 561.581 kb on + strand, within Atu3512 at 561.581 kb on + strand, within Atu3512 at 561.581 kb on + strand, within Atu3512 at 561.581 kb on + strand, within Atu3512 at 561.589 kb on - strand, within Atu3512 at 561.589 kb on - strand, within Atu3512 at 561.589 kb on - strand, within Atu3512 at 561.589 kb on - strand, within Atu3512 at 561.589 kb on - strand, within Atu3512 at 561.589 kb on - strand, within Atu3512 at 561.589 kb on - strand, within Atu3512 at 561.686 kb on - strand, within Atu3512 at 561.686 kb on - strand, within Atu3512 at 561.758 kb on - strand at 561.760 kb on - strand at 561.839 kb on + strand at 561.912 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F10 remove 559,824 + +1.5 559,852 - -0.4 559,966 - Atu3510 0.19 +0.2 560,136 + Atu3510 0.39 +0.5 560,144 - Atu3510 0.40 +0.4 560,320 - Atu3510 0.60 -0.1 560,508 + Atu3510 0.82 +1.9 560,650 + +0.6 560,658 + +0.4 560,672 + -0.3 560,679 - +2.8 560,758 - Atu3511 0.23 +1.6 560,774 + Atu3511 0.29 -1.1 560,876 + Atu3511 0.62 -1.7 560,945 + Atu3511 0.85 +0.1 560,953 - Atu3511 0.88 -1.5 561,040 - -0.0 561,188 - Atu3512 0.23 -0.7 561,291 - Atu3512 0.36 -1.1 561,296 + Atu3512 0.37 +0.3 561,371 - Atu3512 0.47 -0.5 561,382 - Atu3512 0.48 +0.3 561,433 - Atu3512 0.54 -0.6 561,509 + Atu3512 0.64 +0.2 561,581 + Atu3512 0.73 +0.1 561,581 + Atu3512 0.73 +0.5 561,581 + Atu3512 0.73 -1.6 561,581 + Atu3512 0.73 +0.7 561,589 - Atu3512 0.74 -0.3 561,589 - Atu3512 0.74 -1.1 561,589 - Atu3512 0.74 -1.5 561,589 - Atu3512 0.74 -0.4 561,589 - Atu3512 0.74 +0.4 561,589 - Atu3512 0.74 +0.9 561,589 - Atu3512 0.74 +0.2 561,686 - Atu3512 0.86 -0.8 561,686 - Atu3512 0.86 -1.0 561,758 - -0.1 561,760 - -0.1 561,839 + +0.5 561,912 + -0.4
Or see this region's nucleotide sequence