Experiment: AgroPhage_F10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3401 and Atu3402 are separated by 13 nucleotides Atu3402 and Atu3403 are separated by 15 nucleotides
Atu3401: Atu3401 - aldehyde dehydrogenase, at 445,133 to 446,596
Atu3401
Atu3402: Atu3402 - 3-isopropylmalate dehydrogenase, at 446,610 to 447,653
Atu3402
Atu3403: Atu3403 - succinate semialdehyde dehydrogenase, at 447,669 to 449,126
Atu3403
Position (kb) 446
447
448 Strain fitness (log2 ratio) -2
-1
0
1
2 at 445.756 kb on + strand, within Atu3401 at 445.756 kb on + strand, within Atu3401 at 445.764 kb on - strand, within Atu3401 at 445.764 kb on - strand, within Atu3401 at 445.795 kb on + strand, within Atu3401 at 445.894 kb on + strand, within Atu3401 at 446.005 kb on + strand, within Atu3401 at 446.033 kb on + strand, within Atu3401 at 446.155 kb on - strand, within Atu3401 at 446.174 kb on + strand, within Atu3401 at 446.212 kb on - strand, within Atu3401 at 446.214 kb on - strand, within Atu3401 at 446.305 kb on - strand, within Atu3401 at 446.359 kb on - strand, within Atu3401 at 446.428 kb on - strand, within Atu3401 at 446.439 kb on - strand, within Atu3401 at 446.449 kb on - strand, within Atu3401 at 446.478 kb on - strand at 446.660 kb on - strand at 446.675 kb on - strand at 446.704 kb on + strand at 446.736 kb on + strand, within Atu3402 at 446.744 kb on - strand, within Atu3402 at 446.749 kb on - strand, within Atu3402 at 446.907 kb on + strand, within Atu3402 at 446.933 kb on + strand, within Atu3402 at 447.056 kb on - strand, within Atu3402 at 447.115 kb on + strand, within Atu3402 at 447.207 kb on + strand, within Atu3402 at 447.243 kb on + strand, within Atu3402 at 447.282 kb on - strand, within Atu3402 at 447.316 kb on + strand, within Atu3402 at 447.316 kb on + strand, within Atu3402 at 447.324 kb on - strand, within Atu3402 at 447.336 kb on + strand, within Atu3402 at 447.336 kb on + strand, within Atu3402 at 447.384 kb on - strand, within Atu3402 at 447.442 kb on + strand, within Atu3402 at 447.442 kb on + strand, within Atu3402 at 447.447 kb on + strand, within Atu3402 at 447.472 kb on + strand, within Atu3402 at 447.495 kb on - strand, within Atu3402 at 447.605 kb on + strand at 447.605 kb on + strand at 447.611 kb on + strand at 447.633 kb on - strand at 447.783 kb on + strand at 447.882 kb on - strand, within Atu3403 at 447.894 kb on - strand, within Atu3403 at 447.963 kb on - strand, within Atu3403 at 448.072 kb on - strand, within Atu3403 at 448.072 kb on - strand, within Atu3403 at 448.098 kb on - strand, within Atu3403 at 448.213 kb on - strand, within Atu3403 at 448.213 kb on - strand, within Atu3403 at 448.369 kb on + strand, within Atu3403 at 448.412 kb on - strand, within Atu3403 at 448.412 kb on - strand, within Atu3403 at 448.550 kb on + strand, within Atu3403 at 448.558 kb on - strand, within Atu3403
Per-strain Table
Position Strand Gene LocusTag Fraction AgroPhage_F10 remove 445,756 + Atu3401 0.43 -1.4 445,756 + Atu3401 0.43 +2.0 445,764 - Atu3401 0.43 -0.5 445,764 - Atu3401 0.43 +0.2 445,795 + Atu3401 0.45 -2.6 445,894 + Atu3401 0.52 -0.5 446,005 + Atu3401 0.60 -0.8 446,033 + Atu3401 0.61 +0.5 446,155 - Atu3401 0.70 -0.5 446,174 + Atu3401 0.71 -0.0 446,212 - Atu3401 0.74 +0.3 446,214 - Atu3401 0.74 +0.6 446,305 - Atu3401 0.80 +0.6 446,359 - Atu3401 0.84 -0.7 446,428 - Atu3401 0.88 +0.7 446,439 - Atu3401 0.89 +0.6 446,449 - Atu3401 0.90 +1.2 446,478 - -0.4 446,660 - +1.5 446,675 - +0.3 446,704 + -0.1 446,736 + Atu3402 0.12 +0.1 446,744 - Atu3402 0.13 -0.1 446,749 - Atu3402 0.13 +0.8 446,907 + Atu3402 0.28 -2.3 446,933 + Atu3402 0.31 +2.2 447,056 - Atu3402 0.43 +1.4 447,115 + Atu3402 0.48 +0.8 447,207 + Atu3402 0.57 +0.1 447,243 + Atu3402 0.61 +1.4 447,282 - Atu3402 0.64 -0.1 447,316 + Atu3402 0.68 +1.2 447,316 + Atu3402 0.68 -1.2 447,324 - Atu3402 0.68 +0.1 447,336 + Atu3402 0.70 +0.5 447,336 + Atu3402 0.70 -2.6 447,384 - Atu3402 0.74 +1.7 447,442 + Atu3402 0.80 +0.3 447,442 + Atu3402 0.80 -0.8 447,447 + Atu3402 0.80 +0.2 447,472 + Atu3402 0.83 +0.3 447,495 - Atu3402 0.85 -0.4 447,605 + -0.5 447,605 + -0.3 447,611 + -1.0 447,633 - -0.0 447,783 + +1.7 447,882 - Atu3403 0.15 +0.6 447,894 - Atu3403 0.15 +1.0 447,963 - Atu3403 0.20 -2.2 448,072 - Atu3403 0.28 +0.4 448,072 - Atu3403 0.28 -0.3 448,098 - Atu3403 0.29 +0.3 448,213 - Atu3403 0.37 -0.0 448,213 - Atu3403 0.37 -1.7 448,369 + Atu3403 0.48 +0.5 448,412 - Atu3403 0.51 +1.0 448,412 - Atu3403 0.51 +0.0 448,550 + Atu3403 0.60 -0.8 448,558 - Atu3403 0.61 +1.2
Or see this region's nucleotide sequence